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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacatgttctttgaatctttaaaagttctgaaggttaaaggaagtcatgaccttattgatgttaaccttgcatacag

Basic information

species Glycine max
transcript GLYMA11G11510.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11510.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g02380.t01 (Vitis vinifera), 5'ss of exon 7
GGTGAGGAACTGAGAAAGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacatgttctttgaatctttaaaagttctgaaggttaaaggaagtcatgaccttattgatgttaaccttgcatacag-------------------
|| ||||||||||||||||| || || |||||   ||||||||||||||||||||||||||| |||||   || || || ||    |   | | | |  | |      |||   ||||| ||||  |   | |||||  || |||                      
GGAGAGGAACTGAGAAAGCTGATTGGAGCTCCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGgttggtatatcttattcatgttactgagaatcgttact-cagaagtttgtcattacct--tcattattaactgtg-atatgtgttcccccttgtaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401737|gb|BE057371.1|BE057371
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|6847035|gb|AW349325.1|AW349325
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|16996922|gb|BM086294.1|BM086294
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCT
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCT
EST: gi|193681399|gb|FK623261.1|FK623261
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTTAGTTCTCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGT-AGTTCTCCA
EST: gi|5760314|gb|AI965741.1|AI965741
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|151394170|gb|EV264041.1|EV264041
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|298177328|gb|HO027109.1|HO027109
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCAT
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCAT
EST: gi|26058249|gb|CA801163.1|CA801163
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|193642127|gb|FK589733.1|FK589733
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|298178107|gb|HO027490.1|HO027490
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|193727893|gb|FK665559.1|FK665559
EST:     AGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|193350327|gb|FK315329.1|FK315329
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTG
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTG
EST: gi|192329017|gb|FK021091.1|FK021091
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAG-TAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|192297529|gb|FG989535.1|FG989535
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAAGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|7589250|gb|AW705028.1|AW705028
EST:     GCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAAG                         A-TGTGAAGGCTGGTGTTGATGCAGCCATC
genomic: GCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACA-Ggtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATC
EST: gi|208324913|gb|GE124839.1|GE124839
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAACCACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|192329018|gb|FK021092.1|FK021092
EST:     AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAG                         AATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAATTTACATTGAATGTAGTTCAAAAACACAACAGgtacatacat ... ttgcatacagAATGTGAAGGCTGTTTTTGATGCAGCCATCAAGGTAGTTCTCCAGCCCCCA