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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTCCTTCCAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAGgcaagcaagcatatatatatgctatatatacaattattacattacgattaataatatgcatgcttgcatgcagttaatatatatactccattgaatgattaaattaactaatattgggatggaattgcag

Basic information

species Glycine max
transcript GLYMA11G11310.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11310.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 6
---------------------GGCATTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTCCTTCCAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAGgcaagcaagcatatatatatgctatatatacaattattacattacgattaataatatgcatgcttgcatgcagttaatatatatactccattgaatgattaaattaactaatattgggatggaattgcag
                     ||||||||| ||    ||||| | ||||||||| || ||||| |||||||| | ||||| |||| | |||||||||||| |  | ||||||||||||||||||| ||  | |||  |    | |||| | |  | || |  |||     | |||||  ||   ||   | |   |  |||   | ||     ||||  | | |                           
GTCCGCGGCAGCAGTCTATTGGGCATTTGGTGATGCACTTCTCAGTCACTCCAACGCCTTTGCCCTCCTTCCCAGATCACACTTCAGGGACATGGCTGTCgtgctgatgctcatccaccaggcaaccac-cctatcaaacccccatattttctttgatcaatttaattaaattaataatcagagtt---ttcgagttgtat---tcctgtgcggaatagtcacag--------------------------

upper sequence: GLYMA11G11310.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 6
------------------------GGCATTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTCCTTCCAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAGgcaagcaagcatatatatatgctatata-tacaattattacattacgattaataatatgcatgcttgcatgcagttaatatatatactccattgaatgattaaattaactaatattgggat----ggaattgcag----
                        ||| || || ||||  ||  | |   | ||||| ||  ||||||| ||||| ||     ||||||||||||| || |||||| | ||||||||||| |||||||||     | | |    |   | |  |  | || ||    | |   |  |  |     | |  |     |   ||     | | |      | |  ||   |   || ||     |||    |  || | |     
CCCGTCCGCCACGGCAGTCTACTGGGCTTTCGGTGACAATCTCTTGACGAAATCCAACGCGCTTGCTCTTCTTCCCAAGAACGCCTTCCGTGACATCGCCgtcattctcatgctcatccatcaggcaagcttttttctttcctcgagctcttctttacttcttcttcttcttcttcttcttcttcttcccgagaagaaagaaagaggaaagtttgccaagtttttctttcttctgattcctcgattctcgcgatggaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24206334|gb|BU965587.1|BU965587
EST:     CAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAG                         GTTATAACATTCGGGTTTGCATGCACCCCATTATACTTC
genomic: CAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAGgcaagcaagc ... ggaattgcagTTTATAACATTCGGGTTTGCATGCACCCCATTATACTTC
EST: gi|18039919|gb|BM308213.1|BM308213
EST:     CAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAG                         TTTATAACATTCGGGTTTGCATGCACCCCATTATACTTCGTGTGGGAGAAA
genomic: CAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAGgcaagcaagc ... ggaattgcagTTTATAACATTCGGGTTTGCATGCACCCCATTATACTTCGTGTGGGAGAAA
EST: gi|18039675|gb|BM307969.1|BM307969
EST:     CAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAG                         TTTATAACATTCGGGTTTGCATGCACCCCATTATACTTCGTGTGGGAGAAA
genomic: CAAAATCACCCTTCCGTGACATGGCTGTCATTTTAATGCTCATCCACCAGgcaagcaagc ... ggaattgcagTTTATAACATTCGGGTTTGCATGCACCCCATTATACTTCGTGTGGGAGAAA