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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgttgctcacgaatccagttgcttgattcaggatgactcaaatcagattttggaaattttgatgtag

Basic information

species Glycine max
transcript GLYMA11G10130.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G068913_T01 (Zea mays), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgt--------tgctcacgaatc-cagttgcttgattcaggatgactcaaatcagattttggaaattttgatgtag
|||||||| ||||||||||| || || |||||||| ||||| ||||||||  ||||||| ||     | ||   ||| |  |  ||||  ||||||||||| |   | |||        || |   ||||  | ||  |||   | || || ||| ||  || || |     |  |||||  ||
GTTGTAAACATGGAATGGGGCAATTTCTGGTCATCACATTTGCCAAGAACTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAGgtgacactttgtgtaaagtatgttatggaatagctgtaccttttgttagtattactgaa--caaatct----gacattgatccag

upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgttgctcacgaatccagttgctt-gattcaggatgact-caaatcagattttggaaatt--ttgatgtag-----------------
|| || |||||||| |||||||||||||||||||||| | | |||||||| || |||||  |||| || ||  | || ||    ||| |||||||   ||| |  || ||           | |  ||| || | || |  |||  | ||| | |  ||||   |  |  |  || | |                 
GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag

upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttag-----------------gttctgttgctcacgaatccagttgcttgattcaggatgactcaaatcag-at--tttggaaattttgatgtag
|| ||||||||||| |||||||| |||||||| |||||||| || ||||| || ||||| ||||| || ||  | || ||  | ||| ||||||||  ||| |                  ||| |   | |   | ||   |||  | | ||       | | | ||||  ||  |||||   || | |  |||
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGATATGgtaatctttgccatacttccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag

upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgttgctcacgaatccagttgcttgattcaggatgactcaaatcagattttggaaattttgatgtag
||||| || |||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||   ||| || ||||||||||||||||||||   ||||  || ||  |   |     | |    |||  | |||   ||   ||||||||    ||||| |  ||
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacagttcaattacttgcccttgtctcttcgatgttccag-tgaacaaatcaagattttgaggcttttgtttcag

upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S401_23V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgttgctcacgaatc------cagttgcttgattca--ggatgactcaaatcagattttggaaattttgatgtag-------
||  | |||||||| |||||||||||||||||||| ||||| ||  | || | |   |||      || ||    || ||||   |||||   ||  | || |     | |    || ||         | ||| ||   ||||  |  || ||     |||   ||    || | | | | |       
GTGATCAATATGGAGTGGGGAAACTTTTGGTCATCACATTTGCCTCGGACCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATATgtaaaaacatctaaaccatgatctattctgctgttactattttcattgtctgccttgggacagcgcttaatgatgtggcttttgattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207848853|gb|GD818884.1|GD818884
EST:     CATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAG                         GGTTTTGAGAAAATGATATCAGGAATGTATCTTGGTGACATCGTGAGGAGA
genomic: CATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttct ... tttgatgtagGGTTTTGAGAAAATGATATCAGGAATGTATCTTGGTGACATCGTGAGGAGA
EST: gi|207829107|gb|GD798097.1|GD798097
EST:     CATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAG                         GGTTTTGAGAAAATGAT
genomic: CATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttct ... tttgatgtagGGTTTTGAGAAAATGAT