Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGGGGCCAGCTTTGGTTGCCCTTTACAATCCACTTCAACCTGCATTTTCTGCCTTCCTGTCCCAAATTTTCCTTGGCACCCCAATTTACTTGGGAAGgtatagctctcctaccacttcaagttattgatgcattattttctaacttgatcgctactcaccaactttaaagggtaaaacattaaaaaaaaaggaataa...
Basic information
species | Glycine max |
transcript | GLYMA11G09540.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G09540.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g49500.3 (Oryza sativa), 5'ss of exon 5
TCTTGGGGCCAGCTTTGGTTGCCCTTTACAATCCACTTCAACCTGCATTTTCTGCCTTCCTGTCCCAAATTTTCCTTGGCACCCCAATTTACTTGGGAAGgtatagct----ctcctaccacttcaagttattgatgcattattttctaacttgatcgctactcaccaactttaaagggtaaaacattaaaaaaaaaggaataa-
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TCCTTGGTCCTTCTCTGGTTGCCCTCTACAATCCACTCCAACCAGCATGTTCTACCATCCTGTCAACTATATTTCTTGGTACCCCAATATATCTTGGAAGgtataacggaaaattctggcatgtaataatgc-gaaatgtgttctttgaactt---tgccatttgacggtttctgaaatttggg-attcattcaactgtagtcgc
upper sequence: GLYMA11G09540.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0087g00880.t01 (Vitis vinifera), 5'ss of exon 6
TCTTGGGGCCAGCTTTGGTTGCCCTTTACAATCCACTTCAACCTGCATTTTCTGCCTTCCTGTCCCAAATTTTCCTTGGCACCCCAATTTACTTGGGAAGgtatagctctcctaccacttcaagttattgat-gcattattttcta--acttgatcgctactcaccaactttaaagggtaaaacattaaaaaaaaaggaataa
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TCTTGGGGCCTTCTTTGGTTGCTCTGTATAATCCACTTCAACCTGCGGCTTCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGgttttattct--aaacacttctaatacctgcttacctcatttcttgttagttgactataagatgttaatatacataagcgaattgatacttcctcta-accagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151402217|gb|EV272030.1|EV272030EST: TCTGCCTTCCTGTCCCAAATTTTCCTTGGCACCCCAATTTACTTGGGAAG CATCCTAGGGG-ATCTTTAATCGTTGCCGGCCTATATATAGT
genomic: TCTGCCTTCCTGTCCCAAATTTTCCTTGGCACCCCAATTTACTTGGGAAGgtatagctct ... gtgatgatagCATCCTAGGGGGATCTTTAATCGTTGCCGGCCTATATATAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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TCTTGGGGCCAGCTTTGGTTGCCCTTTACAATCCACTTCAACCTGCATTTTCTGCCTTCCTGTCCCAAATTTTCCTTGGCACCCCAATTTACTTGGGAAGgtatagctctcctaccacttcaagttattgatgcattattttctaacttgatcgctactcaccaactttaaagggtaaaacattaaaaaaaaaggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa