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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGgtgatatgtaatttttatttttgcttttcatagcatgagaaaatatatataaggcccattctcatcaaatcccctgatatgagatggggaattattggaa...

Basic information

species Glycine max
transcript GLYMA11G09370.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09370.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 6
GCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGgtgata--tgtaatttttatttttgcttttcatagcatgagaaaatatatataaggcccattctcatcaaatcccctgatatgagatggggaattattggaa----
|||||||| ||||||||||| ||||||| ||  || |||||||| | ||| |||||| |||| |   ||||||| || ||| ||||||||||||| | |    ||  | | ||| |||||||   | |   ||| | |  ||| |     | | | | || |||      | |    | | ||   | ||   |     
GCACTTCTGGATTATGAAAGGCATAAAACACGTGGCGGTGAGCTCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatcatacctgtaattattgctttcttttgttggagtagaggtatct-----cgactgtaatgaaaatttaagttg-atggttggatgtcatctcagccaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208193934|gb|GD993783.1|GD993783
EST:     TCCAGAGCCTATAAATATTGAAAATCAG                         GCCTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAG
genomic: TCCAGAGCCTATAAATATTGAAAATCAGgtgatatgta ... gaaaattcagGCCTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAG
EST: gi|7042403|gb|AW472297.1|AW472297
EST:     TGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAG                         GCCTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAG
genomic: TGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGgtgatatgta ... gaaaattcagGCCTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAG