1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GGGCCTGCCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTTgtaatacctgaagcttgttactggtttgcttctctgcaatggggttgtataaatgatgaaatgcttatagaaggcttttcttgcttttttgtccttgatacataattag
species | Glycine max |
transcript | GLYMA11G08390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTT GTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGATEST: gi|207681192|gb|GD661939.1|GD661939
genomic: CCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTTgtaatacctg ... acataattagGTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGAT
EST: AGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTT GTTGGCAAGAATCTTCATGTTEST: gi|207797522|gb|GD769920.1|GD769920
genomic: AGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTTgtaatacctg ... acataattagGTTGGCAAGAATCTTCATGTT
EST: GAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTT GTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGATEST: gi|207803818|gb|GD772231.1|GD772231
genomic: GAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTTgtaatacctg ... acataattagGTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGAT
EST: GAAAGGAGCGAGTTGCGCGATCTT GTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGATEST: gi|120531471|gb|EH259604.1|EH259604
genomic: GAAAGGAGCGAGTTGCGCGATCTTgtaatacctg ... acataattagGTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGAT
EST: CCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTT GTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGAT
genomic: CCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTTgtaatacctg ... acataattagGTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCCTGCCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGCGATCTTgtaatacctgaagcttgttactggtttgcttctctgcaatggggttgtataaatgatgaaatgcttatagaaggcttttcttgcttttttgtccttgatacataattag
- - - - - GGAGAA
- - - - - - - AAGGAG
- - - - - - - - AGGAGA
- - - - - - - - GGAGAA
- - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - AAGGAG