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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTTATAAAACCTGgtgagcaaaaatatgtgttaatcgttattttgttccctttttatccctctttgcattcaacatgttcttgcaatctttatttgagagttatttgttctctctctttgaaaacaaaacag

Basic information

species Glycine max
transcript GLYMA11G08180.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 5
AATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTTATAAAACCTGgtg-----agcaaaaatatgtgttaatcgttattttgttccctttttatccctctttgcattcaacatgttcttgcaatctttatttgagagttatttgttctctctctttgaaaacaaaacag
|| || |||||||| |||||||| || || |||||||||||||| || ||||||||| |||| || || |||||||| |||        ||| |   | || | ||    || ||       |  |  |  |  |||| |   |  ||     |  ||     | ||    | |||  || | |   ||    |    |    
AACTTCCTTTTCAAATCAACCAAGGAGGACTCACCTTTAAAGGCAACAGATTTTGGTCTGTCAGACTTCATAAAACCAGgtatttatttcaagagcttttgcttatgtgcatctttgctatgtgcttccaattgttgcttctgatttgagtaggacatacaagtctgcagttcattcattgttttctttcattactgtag---

upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G66210.2 (Arabidopsis thaliana), 5'ss of exon 6
AATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTTATAAAACCTGgtgagcaaaaatatgtgttaatcgttattttgttccctttttatccctctttgcattcaacatgttcttgcaatctttatttgagagttatttgttctctctctttgaaaacaaaacag
|| ||| | ||||| ||| |  ||  |||||| ||| |||||||||| ||||||||||| || |||||||| ||||| ||| || |    ||  | | ||     | |     |        |   | ||   |     | | ||||    || | | |   | |   | |   ||  || |                
AACTTTTTGTTCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACGGATTTTGGTTTATCGGATTTTATCAAACCAGgttagta---ctagctatcaa-----aatccacacaagcaaagtaagtgttaaga----gcgtattctgttgatttctgtgata-aacaactcaatccttcacag--------------

upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 5
AATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTTATAAAACCTGgtgagcaaaaatatgtgttaatcgttattttg--ttccctttttatccctctttgcattcaacatgttcttgcaatctttatttgagagttatttgttctctctctttgaaaacaaaacag------------
|||||||||||||||||||||||||| || || ||||| ||||| || ||||||||| | || || || ||||| |||||| ||  ||| |  |  ||  ||  ||| | |  ||     |  ||   |   ||  ||     |||||   ||||    |  |  |   |  | | | |     |   |||||  || |             
AATTTTCTTTTCAAGTCAACCAAAGAGGACTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaatttcgccttc-tcaatatatggactttgaaatccatattttcatgggtttctgttgttcaaacaattacaacatatg--cttctagcttttgaattggaaaaactgaatatgaataaacacag