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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttccctcctccttgctttctgtttttcatttgcattgggacaatgaagaagtgagggtctattctgaaaaaatttaaaaggctacccattaaa...

Basic information

species Glycine max
transcript GLYMA11G07530.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g47600.1 (Oryza sativa), 5'ss of exon 6
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc-cctcctccttgctttctgtttttcatttgca-----ttgggacaatgaagaagtgagggtctattctgaaaaaatttaaaaggctacccattaaa
||||  ||  | ||||| |  ||||| || |||||||||||||| || |||||||||||||| ||||| |||   |  |   |||||||||| | |||       | |      |    |  ||   |  ||   ||   || ||  | |  | |     | |  | |    
GAACAAGTTGTCCCTGGATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatcccatcatgtccttgctttttttttagagaggggaaattcctccatccttggttacatggaagttgcttttgttaga--taaggtttccatgctt----

upper sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G18230.1 (Arabidopsis thaliana), 5'ss of exon 6
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaa--aagttccctcctccttgctttctgtttttcatttgcattgggacaatgaagaagtgagggtc-tattctgaaaaaatttaaaaggctacccattaaa
|| || |||||  | || || ||||| ||||| ||||||||||| |||||||| |||||||| |||||||  ||    | |   ||    | |   | | |    || |||     | | |  ||    |  ||   || |    ||| ||  |               
GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaactcttaaacccaattctacctctatgtaatgtattaccttagtaagaaaccaggaatcaccttgttctgaaacttgcag--------------

upper sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02050.t01 (Vitis vinifera), 5'ss of exon 5
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttccctcctccttgctttctgtttttcatttgcattgggacaatgaagaagtgagggtctattctgaaaaaatttaaaaggctacccattaaa-
|| || || || |||||||| || |||||||||||||| |||||| |||||||||||||||| |||||||||      || | ||   | |   |||||  | |  |     | |||       ||||     | | | |   |||  ||| || |    |  ||| 
GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATGCCTATGATTGATCAGgtaaaaaaaatttctttctctgtctaactttttattcttgacatccagaatcttcttttgagtaaacactattacccaatc-aaagggttgtttaggaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390382|gb|CA853577.1|CA853577
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAG
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAG
EST: gi|12689521|gb|BG155857.1|BG155857
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|10235681|gb|BE804569.1|BE804569
EST:     GTTCCTTACTTCGTGCTCGGGCTGTTGGACTAATGCCTATGATAGACCAA                         GGTGAGATGGATGACATGATC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATC
EST: gi|192316515|gb|FK009312.1|FK009312
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|17022265|gb|BM093299.1|BM093299
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|15661703|gb|BI699074.1|BI699074
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|11273956|gb|BF324342.1|BF324342
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATA
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATA
EST: gi|19452855|gb|BM954265.1|BM954265
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|192333273|gb|FK026154.1|FK026154
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|15814337|gb|BI786612.1|BI786612
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|193495770|gb|FK461108.1|FK461108
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|6481455|gb|AW200726.1|AW200726
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         NGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|15203687|gb|BI426455.1|BI426455
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGCTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC