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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttcttgtacaatctactttcataatctacagtgcttgcatatgacattcctcatatataattcaatttttttttatgtttatag

Basic information

species Glycine max
transcript GLYMA11G06650.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06650.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
TTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatcct-tcttgtacaatctactttcataatctacagtgcttgcat-atgacattcctcatatataattcaatt------tttttttatgtttatag
||    ||||||| ||    ||  ||||||| || ||||||| ||||||  ||||| | |||||||||||||| |||||| |||||||||| || || ||||||  | |||  ||   ||| || ||  ||  |    | ||||| | || |  ||     ||| |    |||        |   |       || ||
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctct-ctatcccaaaatgtt-tacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag

upper sequence: GLYMA11G06650.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
TTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttcttgtacaatctactttcataatctacagtgcttgcatatgacattcctcatatataattcaa---tttttttttatgtttatag
|||   ||||||| ||    ||||||||||| || |||||||||||||| |||||| | |||||||||||||| |||||  |||||||||| || || |||||    |||| |||  ||||   |   ||  |    | ||||| | |   | |  | ||  ||    |||        ||   ||  || ||
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctcta---tagcaaattgtt-tacttgc-tttagtagttttgatgcatgtggcaaaaacaaccttccttgaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011271|gb|BG726202.1|BG726202
EST:     ATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAG                         GTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAG
genomic: ATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttct ... atgtttatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAG