Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattcccttaattctcatgggtgtgcaatttcgttactcatttttgcaaagcttgattatatgaataattgatatttgtttgggcaattccttatacat...

Basic information

species Glycine max
transcript GLYMA11G06610.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 5'ss of exon 11
AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgta--ttcccttaattctcatgggtgtgcaatttcgttact-catttttgcaaagcttgattatatgaataattgatatttgtttgggcaattccttatacat
|     |||||  ||  ||    | ||||||| |||  | |  ||| | |||||||||| || |||||| || |||||||||| |||||||||||| ||||||   ||  |   || ||     |  |     || | | |  |  |      |  || |    |  |||  ||    |||  |   || || | | |   | 
AGTGGGCAAAGTAGGGCATGTGTGGCAAGCCTTTGCCGTTGCACAATCAGAGCCTCTTTTACGCTTTGCGCTTTGTTCAGGAAGCCATTCTGATCCCGCGgtaagctcattgcgttttctcaaattggtgtcatcttcattgtacctcgatctattttaaactaaccaatgctt--ccttttatcaagccatacttgagtaa-

upper sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G23700.1 (Arabidopsis thaliana), 5'ss of exon 10
AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattcccttaattctcatgggtgtgcaatttcgttactcatttttgcaaagcttgattatatgaataattgatatttg--tttgggcaattccttatacat
|||||||| | | ||||||  ||  ||||  ||| | || |||||  | |||||||| | | |||||||||| |||||||| ||||||||||| |||||||||       ||  ||        | || ||| || | || | |||| | |    ||     |||||   |  | ||||  ||| |                
AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagtagagaacgct--------tacacttttgtca-tcttctttgaagaatgagagatcttgaatgtgttttctttggctttag----------------

upper sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 9
AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattcccttaattctcatgggtgtgcaatttcgtta-ctcatttttgcaaagcttgattatatgaataattgatatttgtttgggcaattccttatacat
|||||||||  |||| |||  ||| ||||  |||||  | |||||  | || ||||||| ||| |||||||||||||||||||  |||||||| || |||||| | |  ||  | | ||  ||       | | |||  ||| |  |     |||||   |||||    |||| | |||  |   ||  | |   ||||  
AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtacttcactatctataatctgttccttggtcctttaattcaataattaggtgcttgtgaatatgttgcattggtgttttctattgct-tactgaatactc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208142174|gb|GD934906.1|GD934906
EST:     AGCTTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCG                         GTACGTGTATATACACCAAAGAGGGTGTTTCAAGAGCTAGAAGTTGCAAAG
genomic: AGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattccctt ... accttcacagGTACGTGTATATACACCAAAGAGGGTGTTTCAAGAGCTAGAAGTTGCAAAG
EST: gi|208037857|gb|GD833995.1|GD833995
EST:     AACCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCG                         GTACGTGTATATACACCAAAGAGGGTGTTTCAAGAGCTAGAAGTTGCAAAG
genomic: AGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattccctt ... accttcacagGTACGTGTATATACACCAAAGAGGGTGTTTCAAGAGCTAGAAGTTGCAAAG
EST: gi|207679636|gb|GD663586.1|GD663586
EST:     AGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCG                         GTACGTGTATATACACCAAAGAGGGTGTTTCAAGAGCTAGAAGTTGCAAAG
genomic: AGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattccctt ... accttcacagGTACGTGTATATACACCAAAGAGGGTGTTTCAAGAGCTAGAAGTTGCAAAG
EST: gi|14259677|gb|BG882585.1|BG882585
EST:     AGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCG                         GTACGTGTTTATACACCAAAGACGGTGTTTCAAGAGCTACAAGTTGCAAAC
genomic: AGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattccctt ... accttcacagGTACGTGTATATACACCAAAGAGGGTGTTTCAAGAGCTAGAAGTTGCAAAG
EST: gi|208233532|gb|GE033639.1|GE033639
EST:     AACCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCG                         GTACGTGTATATACACCAAAGAGG
genomic: AGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattccctt ... accttcacagGTACGTGTATATACACCAAAGAGG