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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTTCAGTCAAGAGGAAAATCAATCTTTTTACTTGAGGGCCCCAATTCAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttcttaaaagcagacaaacttgtttaggaatatttattactcaaaaaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcag

Basic information

species Glycine max
transcript GLYMA11G05190.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05190.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 6
GTTTCTTCAGTCAAGAGGAAAATCAATCTTTTTACTTGAGGGCCCCAATTCAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttcttaaaagcag-acaaacttgtttaggaatatttattactcaaaaaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcag
|| |||||||  |  ||| ||| |||| |||   ||  | |||||  |||| |||||  || | || || |||||||| ||| ||||||||||||||||||||  |||         |     ||||||  ||   |  || |||     |||  | |  || |||   |     |   ||  | | | ||  |||    ||      
GTATCTTCAGGTAGAAGGGAAAGCAATATTTCAGCTCAATGGCCCTGATTCTGATCTGATCCTGAATACACTTATTTTCAACTCGTTTGTCTTCTGCCAGgtacttttggaagtcctctttgtaaactttgtttcaagcatctatgtgataaatgaatggtagattatga-----taggcaagtttagctttttttttcattaca---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964262|gb|BM271000.1|BM271000
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|17962825|gb|BM269582.1|BM269582
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|48575237|gb|CO036303.1|CO036303
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGGAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|10844525|gb|BF067783.1|BF067783
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|13789871|gb|BG652462.1|BG652462
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|48575415|gb|CO036392.1|CO036392
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|13787516|gb|BG650108.1|BG650108
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA