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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGCTGCCTCCATTTGTTCCATTTGCTCAGGCATTTGCAGCTGTACTTACTGCTGTCCTTACTGGTTCTCTCTATTACATGGCTGCCTCTCCTAAAGgtgactttgtttattgcccttttgtattttccctacttcgttctcagtctgattaaatgatggcatctcccaatggttctatcttttttttttctctctttcag

Basic information

species Glycine max
transcript GLYMA11G04660.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04660.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g01014.1 (Oryza sativa), 5'ss of exon 6
GGTGTGCTGCCTCCATTTGTTCCATTTGCTCAGGCATTTGCAGCTGTACTTACTGCTGTCCTTACTGGTTCTCTCTATTACATGGCTGCCTCTCCTAAAGgtgactttgtttattgcccttttgtattttccct-acttcgttctcagtct---gattaaatgatggcatctcccaatggttctatcttttttttttctctctttcag
||  || |||||||||||||||||||||||||  | |||||||| |   | ||||| |  || || || || ||||||||  ||||| |  | || |||||||||| |  ||      ||||| | |||      |  | |   | | |||    |  || || || ||| |    ||   | |     | | |||      || |||
GGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCCATCACTGCGGCTCTCACAGGATCACTCTATTATGTGGCTACTGCCCCGAAAGgtgactctaatttgcatgcttttctgtttggaaggaagtggcattgattcttgaaaccaagtg-tgacatatatatatacatgttgtgatatatttgtatgattgcag

upper sequence: GLYMA11G04660.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0012g01220.t01 (Vitis vinifera), 5'ss of exon 6
GGTGTGCTGCCTCCATTTGTTCCATTTGCTCAGGCATTTGCAGCTGTACTTACTGCTGTCCTTACTGGTTCTCTCTATTACATGGCTGCCTCTCCTAAAGgtgactttgtttattgcccttttgtattttccctacttcgttctcagtctgattaaatgatggcatctcccaatggttctatcttttttttttctctctttcag
|| ||||||||||||||||| |||||||| ||||| |||||||||||| | || ||||  ||||||||||| ||||||||  ||||||||||||| ||||||   ||   | |   | |||||  |   |   ||| |  |  |     |   || |   ||  || | | | |   | | ||    |                
GGAGTGCTGCCTCCATTTGTGCCATTTGCCCAGGCGTTTGCAGCTGTAATCACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattatatcaaacctcttttaaacaatg--tacctaatcatttcatttcctacactttg--atttacaagtttctttttccacatcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203079|gb|BI425847.1|BI425847
EST:     TACTGCTGTCCTTACTGGTTCTCTCTATTACATGGCTGCCTCTCCTAAAG                         ATCCTACTTATGTTGTTGCACCTGTTTTACAATCTCGCTCTGGTCGCCAAG
genomic: TACTGCTGTCCTTACTGGTTCTCTCTATTACATGGCTGCCTCTCCTAAAGgtgactttgt ... tctctttcagATCCTACTTATGTTGTTGCACCTGTTTTACAATCTCGCTCTGGTCGCCAAG