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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGTTTGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAAgtaaattttccctgctacaatcattatcccattaactgttaagttgtgtgatgatatctgctgacttcagctttccttcccatgaaacag

Basic information

species Glycine max
transcript GLYMA11G02560.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024016|gb|CX710757.1|CX710757
EST:     TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAA                         ATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
genomic: TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAAgtaaattttc ... catgaaacagATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
EST: gi|208086371|gb|GD879433.1|GD879433
EST:     TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAA                         ATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
genomic: TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAAgtaaattttc ... catgaaacagATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
EST: gi|209710881|gb|BW653642.1|BW653642
EST:     TGG-TGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAA                         ATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
genomic: TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAAgtaaattttc ... catgaaacagATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
EST: gi|7925555|gb|AW831590.1|AW831590
EST:     TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAA                         ATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
genomic: TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAAgtaaattttc ... catgaaacagATGACAGATGCCCGCTGCTCAAAATGTATGGATTGTAAGGTGGGCTTGAGA
EST: gi|14008792|gb|BG725396.1|BG725396
EST:     TGGTTGCTGAGGAAAAAACCAAAGAGCCTGACGAGACCCAGCACTTGCAA                         ATGACAGATGCC
genomic: TGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAAgtaaattttc ... catgaaacagATGACAGATGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGTTTGGTTGCTGAGGAAAAAACCAAGGAGCCTGACGAGACCCAGCACTTGCAAgtaaattttccctgctacaatcattatcccattaactgttaagttgtgtgatgatatctgctgacttcagctttccttcccatgaaacag

- - - - - - - - - - - - -  AAGGAG