Sequence
atgc intronic sequence ATGC exonic sequenceTGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagcttgctctatcgattaacacaccattacatatacctcatttttaaagtggaaaacaacctaatttacccccccccccccccccctcctttactaa...
Basic information
species | Glycine max |
transcript | GLYMA11G02520.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 4
TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaag----cttgctctatcgattaacacaccattacatatacc-tcatttttaaagtggaaaacaacctaatttacccccccccccccccccctcctttactaa
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TGATAAAGGTGAAATGTGTGCAATGAAGGAGGTCACCCTTTTCTCAGACGATCCTAAATCAAAAGAAAGTGCAAAGCAGTTGTGTCAGgtatgacatttttctcca-cgtttactgtccttttctttacgctatcttctctgctcttatattattctttatttaccag-------------------------
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagct-tgctctatcgattaacacac--cattacatatacctcatttttaaagtggaaaacaacctaatttacccccccccccccccccctcctttactaa
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TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacacatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 6
lower sequence: AC209208.3_FGT001 (Zea mays), 5'ss of exon 3
TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgta-agcttgctctatcgattaacacaccattaca---tatacctcatt--tttaaagtggaaaacaacctaatttacccccccccccccccccctcctttactaa------------------------------------------------------------
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TGACAGAGGTGAAATGTGTGCGATGAAGGAGGTTACCCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAGgtatggtgtcttgtacatgtttgcacaatattgaaaactaggcctgtttggtttcttgcctaagacaccacaacttgcctaagctagtgactaag-cttagacaagttgtgaccatcatgcctcatgctgtactttctcttttaacattattatttcatttcacag
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagct-tgctctatcgattaa-cacaccattacatatacctcatttttaaagtggaaaacaacctaatttacccccccccccccccccc--tcctttactaa-----
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TGAAAGTGGGGAGATGTGTGCCATGAAAGAGGTTACTCTATGCTCAGATGATCCTAAGTCAAGGGAGAGTGCACAACAATTGGGGCAAgtaagttacacatcatcatctgttcagaacaacggaagctgctctttggtgcttttgtttttgaattttctaacctttctgcttctctttcaatgattgactctcgcag
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 5
TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagcttgctctatcgattaacacaccattacatatacctcatttttaaagtggaaaacaacctaatttacccccccccc--cccccccctcctttactaa------------------------------------
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TGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAgtaagttttctctagtagata------tgctggaaacttgctggttttgaagaaaaaaactggttttttttttttttttttggcaccttcttgcacagttaaaggacaaattataaacttaccagtgctatttggcag
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 2
TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagcttgctctatcgattaacacaccattacatatacctcatttttaaagtggaaaacaacctaatttacccccccccccccccccctcctttactaa------------------------------------
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TGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAgtaagttttctcta---gtagatacgctggaa-acttacttg--ttttgaagaaaaaaactggttttttt-ttttttttggcaccttcttgcacagttgaaggaaaaattataaacttaccagtgctatttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13478024|gb|BG507669.1|BG507669EST: TTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAA GAAATTGCATTGCTAAGTCACCTGCGGCATCCAAATATAGTCCAATATTAT
genomic: TTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagcttgc ... catcttgcagGAAATTGCATTGCTAAGTCACCTGCGGCATCCAAATATAGTCCAATATTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagcttgctctatcgattaacacaccattacatatacctcatttttaaagtggaaaacaacctaatttacccccccccccccccccctcctttactaa
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc