1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCAATCTGAAAGGTCTGCATATCCATCATCAAAACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagctcccattccccctccccccctccctttgggataatttaagcttaatattaactttgtgtacttgtttgtgtgtacatcaacaaaatattt...
species | Glycine max |
transcript | GLYMA11G02340.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTEST: gi|208285774|gb|GE087372.1|GE087372
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTT
EST: AAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTEST: gi|193721610|gb|FK661650.1|FK661650
genomic: AAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|193593242|gb|FK548896.1|FK548896
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: GGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTEST: gi|208092434|gb|GD887511.1|GD887511
genomic: GGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|193605125|gb|FK559869.1|FK559869
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|193600872|gb|FK551193.1|FK551193
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|208053186|gb|GD853519.1|GD853519
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: CCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|208303217|gb|GE101038.1|GE101038
genomic: CCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|208106192|gb|GD905133.1|GD905133
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|208271348|gb|GE068326.1|GE068326
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAAEST: gi|193382871|gb|FK347734.1|FK347734
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAA
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAA-GAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCEST: gi|193485581|gb|FK448758.1|FK448758
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCC
EST: GGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|193544466|gb|FK500677.1|FK500677
genomic: GGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|208333590|gb|GE131983.1|GE131983
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTEST: gi|193574245|gb|FK527882.1|FK527882
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGEST: gi|207845112|gb|GD817565.1|GD817565
genomic: AGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAG
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|208314468|gb|GE111816.1|GE111816
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTEST: gi|208232523|gb|GE032276.1|GE032276
genomic: AGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|193423809|gb|FK387698.1|FK387698
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAA-GCTTGATGGTGAEST: gi|193694906|gb|FK632976.1|FK632976
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGA
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|193388140|gb|FK353865.1|FK353865
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTEST: gi|208108188|gb|GD902504.1|GD902504
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTT
EST: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTEST: gi|208339388|gb|GE134432.1|GE134432
genomic: AACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
EST: ACCGAGGTACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAG GAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
genomic: ACCGAGG-ACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagc ... tgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAATCTGAAAGGTCTGCATATCCATCATCAAAACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGgtttgccagctcccattccccctccccccctccctttgggataatttaagcttaatattaactttgtgtacttgtttgtgtgtacatcaacaaaatattt
- - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt