Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgtttgctacttttttatatgtgttctcttaattgcatgacctgacattaaggttatctctgtgactggagatcacataggagtcaaaacatgta...

Basic information

species Glycine max
transcript GLYMA11G01380.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G01380.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g42940.3 (Oryza sativa), 5'ss of exon 4
----------------------------------ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgtttgctacttttttatatgtgttctcttaattgcatgacc--tgacattaaggttatctctgtgactggagatcacataggagtcaaaacatgta
                                   | || || |||||||| |||||||| ||||||||  | ||||||||||| ||||| |||||| |||||||  |   ||  | | || |   | |||    |  || ||  |   || ||   |  ||| |    |       | ||| ||     |   | | | | 
GCTCTAACTTACTGTGTGGTAATCTGTCTTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGgtatgc-tcaacttgtctctttttctttttccagaacctgtatttcttatggcagctactttaacatcatctagcttgttcagatgactatattacctttt-

upper sequence: GLYMA11G01380.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 5'ss of exon 5
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgtttgctacttttttatatgtgttctcttaattgcatgacct--gacattaaggttatctctgtgactggagatcacataggagtcaaaacatgta
 | || || |||||||| |||||||| ||||||||  | ||||||||||| ||||| |||||| |||||||  |   ||  | | || |   | |||    |  || ||  | |  | ||   |  ||| |    |       | ||| ||     |   | | | | 
GCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGgtatgc-tcaacttgtctctttttctttttccagaacctgtatttcttatggcagctactttaacatcatctagcttgttcagatgactatattacctttt-

upper sequence: GLYMA11G01380.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 4
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgtttgctac--ttttttatatgtgttctcttaattgcatgacctgacatta-aggttatctctgtgactggagatcacataggagtcaaaacatgta
 | || || |||||||| |||||||| || |||||  | ||||||||||| ||||| |||||| |||||||| |  || ||  ||| |     |  ||   ||  |    |||       |    ||| || |    |    |   |     ||  ||   | | |   
GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCTAACAAGCAAGACATGgtatgt-tcagccacattttctctggagcatttattttgtgttgtgattcattttagtgggtgatttagaagggctggcttggtgaagtggttctatcttt--

upper sequence: GLYMA11G01380.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G03120.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgtttgctacttttttatatgtgttctcttaattgcatgacctgacattaaggttatctctgtgactggagatcacataggagtcaaaacatgta
   |||||||  |||||||| |||||||| ||||||||  | |||||||| |||||||||||| |||||   |||   ||   | |    |   || | | |  |   |    |  |||| |    |  ||   | ||| |      ||     |||         
GATATCATAAGGGACCCATTCATGCTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGgtaaaagttca-taggctctagctttccttatttcatattttttcgttctcatttaccaaaattc---gtctgaactctttatgaatttcag--------

upper sequence: GLYMA11G01380.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0039g02240.t01 (Vitis vinifera), 5'ss of exon 5
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgt--ttgctacttttttatatgtgttctcttaattgcatgacctgacattaaggttatctctgtgactggagatcacataggagtcaaaacatgta
 | |||||    || ||||||||||| || || ||||||||| | ||||| |||||||| ||| ||||||||    ||  |   || ||   ||| || | |||||           |   ||          ||       | |     |  |    || |||    
GCCATCATTCGAGATCCATTTATGCTGAACAGCGTCATCTTGATTTTTGCAAACAAACAGGACATGgtatgttgcattagtggattcttgattgtttttttttaatcttgctcatgaaagatataaaagcacatgaaggaaaacacggattctggtctaacacaga--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199192|gb|HO042555.1|HO042555
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG                         AGAGGGGCGATGACGCCGATGGAAGTATGTGAAGGA
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCGATGACGCCAATGGAAGTATGTGAAGGA
EST: gi|298188565|gb|HO035258.1|HO035258
EST:     CATTTACGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG                         AGAGGGGCGATGACGCCAATGGAAGTATGTG
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCGATGACGCCAATGGAAGTATGTG
EST: gi|298172316|gb|HO019356.1|HO019356
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG                         AGAGGGGCGATGACGCCAATGGAAGTATGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCGATGACGCCAATGGAAGTATGTGAAGGACTAGGTCTCTTTGAT
EST: gi|298185092|gb|HO030305.1|HO030305
EST:     CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG                         AGAGGGGCGATGACGCCAATGGAAGTATGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCGATGACGCCAATGGAAGTATGTGAAGGACTAGGTCTCTTTGAT
EST: gi|192296463|gb|FG989828.1|FG989828
EST:     CATTCATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTG                         AGAGGGGCGATGACGCCAATGGAAGTATGTGAAGGACTAGGTCTCTTTGAT
genomic: CATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgttt ... tcttttgtagAGAGGGGCGATGACGCCAATGGAAGTATGTGAAGGACTAGGTCTCTTTGAT