Sequence
atgc intronic sequence ATGC exonic sequenceTCCAGTTCCATTTAGGCTACTGGGAGATGAAGCAAAGGGTTGGTTAGACACCACATATTTGTCGAGTTCAGGAAACCTTCATATCTCAAAAGGAAATAAGgtgattaggcattttcagtaaaaacatcattctagtagtcttttgttccattccctgagtaaaattcttaattgtcaataacataaagtatttctatatatgctttatatttctaagaattattagcaacatatctatagtgcag
Basic information
species | Glycine max |
transcript | GLYMA10G44120.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G44120.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G51110.1 (Arabidopsis thaliana), 5'ss of exon 5
TCCAGTTCCATTTAGGCTACTGGGAGATGAAGCAAAGGGTTGGTTAGACACCACATATTTGTCGAGTTCAGGAAACCTTCATATCTCAAAAGGAAATAAGgtgattaggcattttcagt---aaaaacatcattctagtagtcttttgttccattccctgagtaaaattcttaattgtcaataacataaagtatttctatatatgctttatatttctaagaattattagcaacatatctatagtgcag
||||||||| ||||| || || || ||||||||||| |||||| |||| || || ||||||||| |||||| |||||| || || | ||||| ||||| | | | | || | | ||||| | ||| || | | || ||| |||| | || | | |
TCCAGTTCCTTTTAGACTTCTTGGTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGATTTCTAGGGGAAACAAGgtaaatgagtttcttgattctcaaaaagaaaattaaagctttatagcatttttatccatgaggctgtatatttgtagcgcag------------------------------------------------------------------
upper sequence: GLYMA10G44120.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g01220.t01 (Vitis vinifera), 5'ss of exon 5
TCCAGTTCCATTTAGGCTACTGGGAGATGAAGCAAAGGGTTGGTTAGACACCACATATTTGTCGAGTTCAGGAAACCTTCATATCTCAAAAGGAAATAAGgtgattaggcattttcagtaaaaacatcattctagtagtcttttgttccattccctgagtaaaattcttaattgtcaataacata-aagtatttctatatatgctttatatttctaagaattattagcaacatatctatagtgcag
|||||| || |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||||| |||||| ||||| | ||| || | | ||| || ||| ||| ||| | | | | | | | | |||| ||| || ||||| ||| || ||
TCCAGTGCCGTTTAGGCTTCTAGGAGACGAAGCAAAGGGTTGGTTAGACACTACATATTTGTCACAATCTGGAAATCTTCGTATCTCAAGAGGAAACAAGgtaaatagacagct----agataactccaagaatactaacttaacttcttctccatcactctactcttcatgtagcaatgcaatataaatatttttatgtacgc------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18692752|gb|BM521600.1|BM521600EST: CCACATATTTGTCGAGTTCAGGAAACCTTCATATCTCAAAAGGAAATAAG GGAACCACATTTGTGTTACAGAAGCAAACTGAACCTAGGCAAAGGTTATTG
genomic: CCACATATTTGTCGAGTTCAGGAAACCTTCATATCTCAAAAGGAAATAAGgtgattaggc ... tatagtgcagGGAACCACATTTGTGTTACAGAAGCAAACTGAACCTAGGCAAAGGTTATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAGTTCCATTTAGGCTACTGGGAGATGAAGCAAAGGGTTGGTTAGACACCACATATTTGTCGAGTTCAGGAAACCTTCATATCTCAAAAGGAAATAAGgtgattaggcattttcagtaaaaacatcattctagtagtcttttgttccattccctgagtaaaattcttaattgtcaataacataaagtatttctatatatgctttatatttctaagaattattagcaacatatctatagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA