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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACAGTGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttgatgcaactctggttctattcttgttactagttacaaagcatttaaattttggatcttatcaccatctcaatggttggttctgaagatattgaaaaaaacataaatattttctgattgtctttgttttgcag

Basic information

species Glycine max
transcript GLYMA10G44070.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44070.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0067g03320.t01 (Vitis vinifera), 5'ss of exon 7
---ATGACAGTGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttgatgcaactctggttctattcttgttactagttacaaagcatttaaattttggatcttatcaccatctcaatggttggttctgaagatattgaaaaaaacataaatattttctgattgtctttgttttgcag
   ||||||||||||| |   | |||||  |||| | | |||||| ||||||||| |||||||||||||| ||||||||||||||||| ||  | ||||||||||  ||||   |    |         ||| ||     |  ||     ||     ||   | |||| ||  |     ||||       |  | |  || ||                                         
GGTATGACAGTGATGAGC---CAGAGGATGTAATACGAACTTCAACTGCTTTGGAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttctctatc-cctaaacgacattttttaggtttcttttgttgctagggaaaagtagatcctagaaatggttcaagaaactctggtaactatgttc----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208133622|gb|GD928307.1|GD928307
EST:     TCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGTTGATCACGTGTA
genomic: TCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGTA
EST: gi|7692182|gb|AW760295.1|AW760295
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGTA
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGTA
EST: gi|193636071|gb|FK583016.1|FK583016
EST:     CGGAATCTAACATTCTTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGT
genomic: CGGAATCTAACA-TC-TTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGCTGATCACGTGT