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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaacttcctttgcagtgttctacaattgtatgttgatgtgtgaatttttaccccctaatatcttcccaatatgtcag

Basic information

species Glycine max
transcript GLYMA10G42940.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 6
CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgta--tttaacttcctttgcagtgttctacaattgtatgttgatgtgtgaatttttaccccctaatatcttcccaatatgtcag------------------------------------------------------
||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| ||| ||||||| |||||||  |||    ||  ||   |||  || | || | |  || ||   | | |   |   |  | ||   | |  |   || |                                                        
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGATCTGGAAAACCCATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagtttttgctcaattcaggtgcactgctatggaa-attcatagttaagtgcatgttcttttatcagtacggatggtggctaaacttatatttctcttctgataatattaataatgtcttccgatgtttattccag

upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaacttcctttgcag------tgttctacaat-tgtatgttgatgtgtgaatttttaccccctaatatcttcccaatatgtcag----------------------------------------------------------------------
||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||| || || || |||||||| || ||| ||||||| |||||||  ||| |||   | ||       || ||||||||    ||| ||| |||    || |       || ||  ||    |  | |                                                                         
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagag-tagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag

upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 5
CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaacttcct-ttgcagtgttctacaattgtatgttgatgtgtgaatttttaccccc-----taatatcttcccaatatgtcag------------------------------------------------------------------
||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||| || || || || || || || ||| ||||||| |||||||  ||| |||   ||  ||  | || |  |   ||  | |||  | | |   | |   |      | ||  ||    |  | |  |                                                                  
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcag

upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 5'ss of exon 7
CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgta------tttaacttcctttgcagtgttctacaattgtatgttgatgtgtgaatttttaccccctaatatcttcccaatatgtcag
||||| ||  | || |||||||| ||||| || ||||| || || || || ||||| || |||||||| || || |||||||| ||| ||||||||||||||       |||| | || | |    |  | ||| ||   ||  | |       |  | ||   |   |  | |         |    
CCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgctttagcctcttgtcacataat-tactatctcataataaaacacacagatataattctagacttttgtttctccag----

upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaacttcctttgcagtgttctacaattgt--atgttgatgtgtgaattttt-accccctaatatcttcccaatatgtcag---------------------
||||||||| | || |||||||| || || |||||||| || || ||||| ||||||||||| || || || || || ||||||||| ||||||||||||||   |   ||     |  || || |  ||   |  |   | |  | |||| |||  |      || |    |  |   |||                        
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053577|gb|BM732244.1|BM732244
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|16346337|gb|BI971932.1|BI971932
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAAACTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|120533316|gb|EH261449.1|EH261449
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|120533616|gb|EH261749.1|EH261749
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|16278890|gb|BI943147.1|BI943147
EST:     AATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|213596831|gb|DB964094.1|DB964094
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|120533188|gb|EH261321.1|EH261321
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|120533627|gb|EH261760.1|EH261760
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|120533687|gb|EH261820.1|EH261820
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|213591852|gb|DB973417.1|DB973417
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|209727398|gb|BW669851.1|BW669851
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|208145241|gb|GD941760.1|GD941760
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGACATTTCTG                         GAAGTTCCATCAATCCTAGTGAGC
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGC
EST: gi|120532915|gb|EH261048.1|EH261048
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|209697688|gb|BW655589.1|BW655589
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCC
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCC
EST: gi|120533425|gb|EH261558.1|EH261558
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
EST: gi|213595962|gb|DB955998.1|DB955998
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaact ... aatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA