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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag

Basic information

species Glycine max
transcript GLYMA10G42250.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 6
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag
|||||| |||||||| ||||| ||||| || ||||| || ||||| ||  ||||||||| |||  | ||| ||||||||||||||||| ||||||| |||||          ||  ||    | |  | | |||| ||  |||| || | | | |  | || |     |    |      || |     ||| ||   |  || | |||                             
TGAGGCGGAAGTGCGGATAGCGGCTGCAGGGAAAGTTACTAAGTTCTGTAGGATTTTAAGTCCTCAGCTTGCAATTCAGCATATTCTTCCTTGTGTCAAGgtg---------ggccaacgcttaaccaaatattatta--actggttttctgctgctgtttat-----tcccagcaaactaact-----tgccaa--ctgcatctgcag-----------------------------

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag
||||||||||||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||| | |||||||| || ||||||||| | || || |||||             |||| ||||||       | || ||  ||  |||          |||| |  |  |   ||    | ||||   ||||||  ||  ||||| ||                             
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgc-------aaagcaattat-------tcgttttgttg-ctat---------tttttttctgagtgaattaactagttca---tgctaa--ttgcatttatag-----------------------------

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag
||||||||||||||| |||||||||||||||||||| || ||||||||||| || ||||||||  | || ||| | || ||||||||| | || || |||||          || |||| ||||||   |||  | | |   ||              || || ||  | |  ||   | || |||   ||| || |    || |||||                             
TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtggg-------ggcaaagcaattattgaacaccatt-tcgttg--------------ctatttttcttctgagtgaattaactca---tgccaagt--gcatctacag-----------------------------

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag
||||||||||||||| || ||||||||||||||||| || || || |||   || ||||| ||| |  || ||||| | ||||||||| | ||| | ||||| |   |            ||  ||  ||||  |  | || |||   | | ||      ||   |||||     | ||   ||  |||  |  |                                           
TGAGGCTGAAGTGCGGATTGCAGCTGCTGGAAAAGTTACAAAATTCTGCAAAATATTAAACCCACAAATTGCAATTGAACATATTCTTCCGTGTATCAAGgtgtgttt------------aagcattgcaca--aacactattgagc-tctgcaccaatattcagtggtt--aacttgtgccttttgtactcatag------------------------------------------

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag
||||||||||||||| |||||||| || ||||||||||||||||| || ||| |||| |||||||| ||| | |||||||| || ||| ||||||||||||||    || ||       ||||| ||  | |   |  ||  |  | || | |   | ||  |  |  || || |   | | |   || ||  |                                            
TGAGGCTGAAGTGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTGCGATTCAGCACATCCTTCCTTGTGTGAAGgtaagactcctt-------aaattcta-tataaacgagttgtt--tgatgtcccctgtctcgtaata-ttctgatacat-actgatgtctggcag-------------------------------------------

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 5
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattat--atacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag
||| |||||||| |||||||||||||| |||||||| || |||||||| |||||| |||| || ||  || | || ||||| |||||  | |||||||||||| |    |  |  ||   |||| |    ||      |||| ||  ||  |   | ||   || | |  |  || |   ||   | |  ||||||  | ||                                      
TGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgcttaagagaattcaattgttttccaagttccttacagaaaatcaacgtatagttgttgcatattactgatgattcctctta--atgctacctgtag-------------------------------------

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag
|||||| ||||| || |||||||||||||||||||| ||||||||||| || |||||||| || || ||  | || ||||| |||||| | ||||| |||||| |||  |     ||  | | | |      ||  |||||   |    |   | |  || |   ||  |||| |  |   |   |      ||||| || |  ||                                
TGAGGCAGAAGTTCGGATAGCAGCTGCTGGAAAAGTTACCAAGTTTTGTCGCATTTTAAACCCTGAACTCGCTATCCAGCACATTCTTCCCTGTGTAAAGgtacacactt-----aagaagagtgtgttgatttcatattatgcaaaggaccaaaatactgtcggtg--tttgctaagcttaccta------taaatctacacgtag-------------------------------

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaac-ttttgcag
|||||||||||| || |||||||||||||| ||||| || || || || | ||| ||||||||||| ||| ||||||| ||||||||| | ||||| |||||   ||  |||   |||  | |            || |  ||| |  |||| |  | ||  | ||| |   |      | ||| ||  |  |       | || |    | | | |  || |  |   | ||||| ||
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagt------------gtttctctg-tattatataatgtctccttttgttcacgaacttactattgagc-taatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207759469|gb|GD731252.1|GD731252
EST:     GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAG                         GAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
genomic: GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatct ... acttttgcagGAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
EST: gi|151407658|gb|EV277473.1|EV277473
EST:     CCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAG                         GAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
genomic: CCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatct ... acttttgcagGAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
EST: gi|254331030|gb|GR842295.1|GR842295
EST:     GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAG                         GAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
genomic: GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatct ... acttttgcagGAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
EST: gi|7926502|gb|AW832528.1|AW832528
EST:     GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAG                         GAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
genomic: GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatct ... acttttgcagGAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
EST: gi|26057519|gb|CA800433.1|CA800433
EST:     GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAG                         GAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA
genomic: GGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatct ... acttttgcagGAATTGTCATCAGATTCTTCTCAGCATGTCCGGTCTGCTTTGGCTTCAGTA