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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTGCCACAAAAGGTTCCCTCTGGTCATTTTGCATCAGTGACTGATATTGCATGGGCTAGATCTGGTGATTATATTATGTCCGTCAGTCATGACCAGgtatttttttaaaacacattctgtccacaaaagctatactgttgatccatcatgtctattattttatctattatgatttcatatgaacttgaatttcaaa...

Basic information

species Glycine max
transcript GLYMA10G41620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41620.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 6
TTGGCTGCCACAAAAGGTTCCCTCTGGTCATTTTGCATCAGTGACTGATATTGCATGGGCTAGATCTGGTGATTATATTATGTCCGTCAGTCATGACCAGgtatttttttaaaacacattctgtccacaaaagctatactgttgatccatcatgtctat-tattttat----ctattat--gatttca-tatgaacttgaatttcaaa
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TTGGCAACCACAAAAAGTTCCCTCTGGGCACTATGCAGCAGTGACTGATATTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgttg-------cttgaggtacaaaaagtattttgtgaactagtcttactcgcctgtgcaatgacactgttatatgctttcagtgctgatttttgttatag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048725|gb|CA785178.1|CA785178
EST:     TTGCATGGGCTAGATCTGGTGATTATATTATGTCCGTCAGTCATGACCAG                         ACAACTAGAATTTATGCTCCATGGAAAGTTGAGGCTCCTCTCCAAGATGGA
genomic: TTGCATGGGCTAGATCTGGTGATTATATTATGTCCGTCAGTCATGACCAGgtattttttt ... aaatttgcagACAACTAGAATTTATGCTCCATGGAAAGTTGAGGCTCCTCTCCAAGATGGA