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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCGTGATGATGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGCGTTGgtaattcaatccgattcttttttattagctctgaattggttagaattaattgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatcttggcag

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 5
AAGCGTGATGATGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGCGTTGgtaattcaatccgattcttttttattagctctgaattggttagaattaattgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatcttggcag
|  |||||||||||| | || |||||||||| |||||| ||||||||||| |||||||||  |||   |||    | ||| | ||   |   |   ||| |||  |||||    |       |  |     |||||  |  ||  ||||   ||                                                              
ACCCGTGATGATGCTAGGCAATTTATGAAGTATCTTCACCCTGATCTTGGTGTTGgtaatg-aatttaatttccatatatgatct---agcagtgcagagttatgtgattggaaa-----aataaaaacctgatttttacccacctttgagcag--------------------------------------------------------------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 5
AAGCGTGATGATGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGCGTTGgtaattcaatccgattcttttttattagctctgaattggttagaattaat--tgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatcttggcag
|  |||||||||||| | || || ||||||| |||||||||||||||||| || |||||| || |  |   |||| | || ||   | | | |  |||| |||||  |   ||  ||  |   |  |||||    |||||  |                                                                           
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttag---ctttctaatcaggctt-agtggtgtagatttaatgcttgataaatactaatttgatatttctactttgagcag--------------------------------------------------------------------------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 5
AAGCGTGATGATGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGCGTTGgtaattcaatccgattcttttttattagctctgaattggttagaattaattgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatcttggcag
|  |||||||||||| | || || ||||||| |||||||||||||||||| || |||||| || |      |||||  || ||   |  | || |    ||| | || ||    || |  | |  |||||| ||||| |      ||||   ||                                                              
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttaa---cttttggatcagactt--actgttgtagatttaatgcttg---ataaatgcta-atttgatatttgta-----ctttgagcag--------------------------------------------------------------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 6
AAGCGTGATGATGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGCGTTGgtaattcaatccgattctttt---ttattagctctgaa--ttggttagaattaattgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatc-ttggcag----------
|| |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||| || |   | | |       | |   |||||||  ||  ||   ||  |||  ||   | |      |||| |  |  ||        | |||| | || ||  ||| |   | ||  || ||  || || || |||        | ||| |   || | |           
AAACGTGATGATGCTCGGCAATTCATGAAGTTTCTCCATCCTGATCTTGGTGTTGgtaatgcatttgaactttgccaaactctcccctctgaacattacttgacatggattagtttgttttgctttctgtaatgcaccttctcttttgtatttgctgagaca--gattagcttattgactgcatattcaagatctgtctagatcgtttttaactatttgtatgacttaacag