Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAAGCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatcatatctatgcaaacttttgaattgtttttttttttgctcaattgcttcttgtggcattttggaacttctgactaatgattccttcaagaac...

Basic information

species Glycine max
transcript GLYMA10G40390.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G40390.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G49970.1 (Arabidopsis thaliana), 5'ss of exon 6
GATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAAGCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatcatatctatgcaaacttttgaattgttttttt---ttttgctca--------------attgcttcttgtggcattttggaa-cttctgactaatgattccttcaagaac--
||||| || ||| | |||||||||||||| ||||||||||||||||||||||| || || || | ||| ||||||||||| ||||| ||| ||||||| |||||| |   | ||| |  |||  |||||| | |   |||   ||||| |||              | | | |||||     || || || ||||| | |  ||||   |    |  |  
GATGTATACACTATCAATTGTGGCATGGCTTTTGGTCAAGCAGCAATGCTTCTTTCTCTCGGGAAAAAAGGTTATCGTGCCGTACAACCACATTCATCAAgtatgtactct-tctcta-aaatatttgaactctaactttgcattttgatcataataaacaaatgcaatacctcttgcccacttgtgtaagcttctaagttttgatggttaatggtgcag

upper sequence: GLYMA10G40390.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0091g00700.t01 (Vitis vinifera), 5'ss of exon 6
GATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAAGCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca---tatctatgcaaacttttgaattgtttttttttttgctcaattgcttcttgtggcattttggaacttctgac--taatgattccttcaagaac--
|| || ||||| ||||| ||||||| ||||| ||||||||||||||||||||| ||  ||||| | |||||||| |||| | ||||||||||| | || |||||||||||   | |||    |||  |||||||| ||| ||||| |    || |  |  ||||   ||  | ||| || | |    |||| | | |||   | |  
GACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAGCAGCAATGCTTCTATCAGTTGGAGCCAAGGGTTACCGTGGTCTACAGCCAAATGCCTCCAgtatgaatcaacttctctcctaaaagatttgaattatttctttttgt----aaattttatttgt---atcctagaagttgtcaagacaatgctgctttctgcatcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207771284|gb|GD746399.1|GD746399
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|193465306|gb|FK430685.1|FK430685
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|6952273|gb|AW424341.1|AW424341
EST:     TATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCTAGTGGTGCTGTTATAGATA
genomic: TATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|163921554|gb|EH039313.1|EH039313
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|5760477|gb|AI965840.1|AI965840
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|193521422|gb|FK481653.1|FK481653
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATC
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATC
EST: gi|193547674|gb|FK504619.1|FK504619
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|193331991|gb|FK301963.1|FK301963
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|21677283|gb|BQ629634.1|BQ629634
EST:     GTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: GTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|15204639|gb|BI427407.1|BI427407
EST:     TCTGTCGCTTGGAACAAAGGGCTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCTAGTGGTGCTGTTATAGATA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|22541066|gb|BU090909.1|BU090909
EST:     ACTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|192333166|gb|FK026495.1|FK026495
EST:     TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
EST: gi|22541300|gb|BU091143.1|BU091143
EST:     TCTGTCGCTT-GAAC-AA-GG-TATCGTGCTGTACAGCCAAATTCATCTA                         CAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA
genomic: TCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCTAgtatgaatca ... gctactgcagCAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACA