Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGGTGTTGAAGTTAAACCCGTAGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTATCTATAGCTTAGCTTCCGATCAAAGCCTTTTCCAGgtaattcagaaatttttacacagtctatttgtcgattaaattctcctgtcctgacactgcattatggatcaatcatgacgttgagttgttcatcatgttc...

Basic information

species Glycine max
transcript GLYMA10G38570.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38570.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 6
TGCTGGTGTTGAAGTTAAACCCGTAGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTATCTATAGCTTAGCTTCCGATCAAAGCCTTTTCCAGgtaattcagaaatttttacacagtctatttgtcgattaaattctcctgt-cctgacactgcattatggatcaatcatgacgttgagttgttcatcatgttc-
||||||| || |||||||| | || ||||||||||||||||||||||||||||| ||||||||  ||   |   ||||||| ||   ||  || |  ||||||          || |||  | |  ||   |  |||   || ||   |   | ||| | |    |  ||  ||  | |  ||  |||||  |  |   || 
TGCTGGTATTAAAGTTAAAGCTGTTGACACAACTGGTGCTGGTGATGCATTTGTAAGTGGGATCCTCAGCAATATAGCTTCAGACATAAATCTCTATCAGgtacccttatttcttatacgaattgaatggtttcatttggttatctcttgtttcacatttctcatttcatatatttttatatt--gttgtagaaaaatgtcg