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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATgtaagattttttttttatgtttatagttttgtcaatgtttttgcatcttcatttctatatgtgggggaaaaacaacgagaatggttgttttataaaattt...

Basic information

species Glycine max
transcript GLYMA10G38370.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38370.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 6
AACCCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATgtaagattttttt--------tttatgtttatagttttgtcaatgtttttgcatcttcatttctatatgtgggggaaaaac--aacgagaatggttgttttataaaattt-------------------------------
||| || ||||||||||| ||| |  | || |||||||| ||||||||||||||||| |||| ||| || || ||||| ||||| ||| ||| | ||| ||||||||   |           |||   | |   |  |  || |  | |  |  | |    |  | |         || |   |  ||||  | |   ||  ||  | ||                               
AACTCTGTCCATAGGATCTATACTCCTCCAGCAAGCTGCAATTTCAGCTTCTTTCCACTACAACAATGTTGAGATTGTTGAATCCAGGCCCACTCCAACTgtaagatacatccaaaattagcttaatgtgaggttcctaacagtaatctatcgccatggaatgaacaatctaaatcaagatttagagagagagataccttcgtaggagttattgaagatactgattattttttgtgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17518947|gb|BM187989.1|BM187989
EST:     CTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAAT                         GATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTG
genomic: CTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATgtaagatttt ... tggtgaacagGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTG
EST: gi|120533744|gb|EH261877.1|EH261877
EST:     CTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAAT                         GATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTG
genomic: CTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATgtaagatttt ... tggtgaacagGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTG