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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATAgtatgactcacattaattatcataatatttagtaaattcatgttacaaccccatcagttacagtcccttacatcatgatgaataatattctaagattgctccttcctttttttcttaattcttttttatgatgttgtag

Basic information

species Glycine max
transcript GLYMA10G37440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37440.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g01510.t01 (Vitis vinifera), 5'ss of exon 5
GCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATAgtatgactcacattaattatcataatatttagtaaattcatgttacaaccccatcagttacagtcccttacatcatgatgaataatattctaagattgctccttcctttttttcttaattcttttttatgatg---ttgtag
||||||||  |||||||||||  | ||| ||||| | |||||||||||||| ||| | |||   || |   ||  |||||||||||||||||||||||||||  |||  | || |      ||| ||   |  || ||  |       ||| ||| ||  |   ||   | ||  |  ||  | |||  |||       ||  |  || |  |||||||| ||| || |    ||| ||
GCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttcatctcaact----cgatacttctcatttttattct---gtttcat-agtgactttgtgttttgttatt-tagatcttcttcgtagacattgatttgatgattatgctaattcttctttttggttgctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404312|gb|EV274122.1|EV274122
EST:     CAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATA                         TTAAGTGTTACAATTAATATCCCTTGCAAAGATGCTTATGTCTTCCAACCT
genomic: CAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATAgtatgactca ... gatgttgtagTTAAGTGTTACAATTAATATCCCTTGCAAAGATGCTTATGTCTTCCAACCT
EST: gi|13481891|gb|BG511234.1|BG511234
EST:     CAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATA                         TTAAGTGTTACAATTAATATCCCTTGCAAAGATGCTTATGTCTTCCAACCT
genomic: CAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATAgtatgactca ... gatgttgtagTTAAGTGTTACAATTAATATCCCTTGCAAAGATGCTTATGTCTTCCAACCT