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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGGTTCAAAGTGACAGGGATGATCCTAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatgtacactacagataattgaaaaatgctgccatccttttatccaatgcttattgtaaacaatattctagaactagaatataagattgttttttctatggatcttgtggtgcag

Basic information

species Glycine max
transcript GLYMA10G37000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37000.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g34440.1 (Oryza sativa), 5'ss of exon 6
GACTTGGTTCAAAGTGACAGGGATGATCCTAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatg----tacactacagata---attgaaaaatgctgccatccttttatccaatgcttattgtaaacaatattctagaactagaatataagattgttttttctatggatcttgtggtgcag--------------------------------------
||     |||||   || ||||||||||| ||||||||| |||| ||||| || ||||||||||| || |||||||| |||    |    | ||||||   ||| |  |  |  |  |      | || | | |  | ||  |   ||| ||| | | |  | |   |  |   |||    |  | | |  ||   ||                                       
GAACGTATTCAAGCGGATAGGGATGATCCAAGCCTACCATTGGTCACTGCCCCATTTGGGCATGCTTCACAGgtatagatggcattgacatgcagatatttatttagcagagtagataataccgtgtc-agttcacactgccac--atactcttgcaatgtagtg--aagtcactttggtaacagttatattgagccaacgttttcgacccaaatgtgactagtgtgatttttgcag

upper sequence: GLYMA10G37000.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G43690.1 (Arabidopsis thaliana), 5'ss of exon 6
GACTTGGTTCAAAGTGACAGGGATGATCCTAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatgtacactacagataattgaaaaatgctgccatccttttatccaatgcttattgtaaacaatattctagaactagaatataagattgttttttctatggatcttgtggtgcag-
|| |  ||||||   |||||||||||||| | ||| || || || |||||||| ||||| |||||||||||||||      || |  | | | | || | ||      |       || |    | ||  || ||  |  | || | ||  |  | |    ||||  ||| ||||||  |||| |  |     
GATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAGgta-----atagaacaaacacatttcagaatctagactggttaattgtttc-tcctacttctatcctgtgtttt-gagttctact----gatt--tttctctatgcctctttttttattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


Nothing found