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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACACAGCATGAGAAGAAACCTATAAGGCCGTTGTCCCCCTGGATTACTGATATTTTGTTGGCTTCACCAGTAGGTATTCGAAGTGACTATTTCCGATGgtgagtatttcttaaaagtaatagataatttagctctatttatttggccagaagtagttaatcatgtatgcatgtatgttttaactttgcttgcaagtcc...

Basic information

species Glycine max
transcript GLYMA10G36600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G844173_T01 (Zea mays), 5'ss of exon 6
TGACAC-AGCATGAGAAGAAACCTATAAGGCCGTTGTCCCCCTGGATTACTGATATTTTGTTGGCTTCACCAGTAGGTATTCGAAGTGACTATTTCCGATGgtgagtatttcttaaaagtaatagataatttagct-ctatttatttggccagaagtagttaatcatgtatgcatgtatgttttaactttgcttgcaagtcc
 || |  |   |||   ||| ||  | |||||  |  |||| ||||| ||||| || ||| | ||| ||||  | || ||||||||||||||||| |||||||||||| |  |||   ||| | ||   |||      |||| | ||  |    |  |    || ||||||   | |||    | | | |       | |  
-GAAATGAATCTGACCGGAAGCCATTGAGGCCACTAACCCCGTGGATCACTGACATATTGCTAGCTGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtgagtaata-ttatttgtatttgacctttttctgattattgaattttcttagaacaacatattatgtatttttatatacaatgagtatatcatggactat

upper sequence: GLYMA10G36600.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 5'ss of exon 7
TGACACAGCATGAGAAGAAACCTATAAGGCCGTTGTCCCCCTGGATTACTGATATTTTGTTGGCTTCACCAGTAGGTATTCGAAGTGACTATTTCCGATGgtgagtatttcttaaaagtaatagataatttagctctatttatttggcc--agaagtagtta--atcatgtatgcatgtatgttttaactttgcttgcaagtcc-
|   |||  |||||| |||||||  |||||| ||||| ||||||||||||||||| ||| | ||| ||||  | |||||  |||||||||| || || ||||  ||   |        |  |    | |||   | | ||||| ||||       ||||||   || | | |   ||| |   |||      |  |||   ||  
TACTACAAAATGAGAGGAAACCTTCAAGGCCTTTGTCTCCCTGGATTACTGATATATTGCTTGCTGCACCTCTGGGTATCAGAAGTGACTACTTTCGTTGgtatgtgaatgc-----atctttttcatttttattatgtttatatggctttgtgtgtagttgtgattaggaagttatgaacacttttgagccgtctgcccttctg