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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaattgatttaatcttgtattttttagaactagtctagatcagttgatctttccttatattttttcttgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttag

Basic information

species Glycine max
transcript GLYMA10G36210.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 4
AGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaattgatttaatcttgtatttttt--agaactagtctagatcagttgatctttccttatattttttcttgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttag
 ||||| ||  |||| |||||    |||||||| || |||||||||||||| ||  ||||||||||||||| | |||| ||||| ||||| ||||    | ||||  |||   |    |||||||||  |  ||   || | ||   || |   |  ||  || ||||  || |  ||                                                   
GGAAGAGTTAGAAATCTTTTCAAAAGAAGTTGTTCGATTTGGAAATCGTTGCAAGAATCCTCAATGGCACAGCTTGGACCGCTACTTTGAAAAgt----gcagtttgatt---tctgccttgtatttaatgaaggtttattttaaggcactaatttattttttgtattgattatactag--------------------------------------------------

upper sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 4
AGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaattgatttaatcttgtattttttagaactag----tctagatcagttgatctttccttatattttttcttgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttag
 ||||| |||||| | || |||   |||||||| || |||||||||||||| || |||||||| ||||||||| |||| ||||| ||||| ||||||    | || | ||  |     |||| |   | ||||   |     | |||   | |  |  ||  || |    ||||    |  |||| |||  | | | ||                                
GGAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCACAACTTGGACCGCTACTTTGATAAgtaa----aattcactt--tgagcccttgcaacctatagagacaaagattttagggtattaaaaattaactcagcgctttt---atgccatcaaac--tctttcag--------------------------------

upper sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G097502_T02 (Zea mays), 5'ss of exon 3
AGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaattgatttaatcttgtattttttagaactagtctagatcagttgatctttccttatattttttcttgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttag
 ||||| ||  || ||||  |  | || ||||| || |||||||| ||||| || |||||||||||||| ||| |||| ||||| ||||| |||||     ||||    |  |     |||| ||||   ||||   || ||  | || | |       | || ||| |     |  |||                                               
GGAAGAGTTAGAAGTATTCACAAGAGAGGTTGTTCGCTTTGGAAACCGTTGCAAGGATCCTCAATGGCATAACTTGGACCGCTACTTTGAAAAgta----cagtttttcttctcagtacttgaatttg--agaatgtgtttactttaggttactaactttcatttttgtctggattccattag--------------------------------------------

upper sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 4
AGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaattgatttaatcttgtattttttagaactagtctagatcagttgatctttccttatattttttcttgtaa-catctaacattgtgttagttatggttttctttgtctttgttgatgtttag
 ||||| ||||  || |||||||| || || ||||||||||| |||||||| || ||||||||||  |||||||||||||| |  ||||| | ||                |  | ||| |||   |||       |    | | | | ||           ||||  || | | ||  |||| || ||   |||||| ||   |  | ||  || |           
GGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGgtt------------ccaacatgatcctgtcactttggtggtca---cacaacgggtg-----------tattccttttggaaagtatctgacttttcattagttctg---tgttatgatttag-----------

upper sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 3
AGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaattgatttaatcttgtattttttagaactagtctagatcagttgatctttccttat-attttttcttgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttag
 |||||| ||||||| |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||||||| |||| || || |||||||||||||  |  |   ||    |  | |||    ||| |     |  | ||   ||    |  |    || | || || | ||||    |||   ||  | ||||                                
GGAAGAACTGAAAATTTTTTCTGGAGAAGTGGTCCGTTTTGGGAATCGATGTAAAGATCCTCAGTGGCACAACTTGGACCGTTACTTTGAGAAgtaatcctgatgttatcttgtctaacttacgctttatgtg--tgatttaagacatcaaagatgaggttctcatgttcttttgtgctgtcttctatgattttag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193708653|gb|FK644989.1|FK644989
EST:     AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA                         GTTAGGTACAGAGCTTACACCACAAAAA
genomic: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtag ... tgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAA
EST: gi|6666544|gb|AW278011.1|AW278011
EST:     AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA                         GTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGAT
genomic: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtag ... tgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGAT
EST: gi|208168740|gb|GD969192.1|GD969192
EST:     AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA                         GTTAGGTACAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGAT
genomic: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtag ... tgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGAT