1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGATTTACCTCAGATACTGGCAGAGGAAACCAGAAACAAAACTCAAGGGTGACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtggttttagtttgcctgtaatatattatgaagaattactatctcttgtaatctttttaaataattttcatattttttattattttttttgcttccttgtag
species | Glycine max |
transcript | GLYMA10G35620.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGEST: gi|208317901|gb|GE116668.1|GE116668
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG ACCGGTTATAGEST: gi|193563942|gb|FK520445.1|FK520445
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAG
EST: GTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGEST: gi|207716491|gb|GD699659.1|GD699659
genomic: GTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: TTTCCCTGAG-TTTTAAG ACTTGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAEST: gi|207845233|gb|GD814830.1|GD814830
genomic: TTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagAC-CGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAA
EST: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTT-CCCTGAGTTTTTAAG ACCGGTTATAGEST: gi|193712737|gb|FK652322.1|FK652322
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAG
EST: TTTGCATTCTCTACTTTTTTCCCTGAG-TTTTAAG ACCGGTTATAGACCCTATCGCATCAATATTTACAATCGAATGCTCTGTGGAEST: gi|207798201|gb|GD770025.1|GD770025
genomic: TTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTT-C-ATCGAATGCTCTGTGGA
EST: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGEST: gi|207718756|gb|GD700650.1|GD700650
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: CCCAAAGTAGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGEST: gi|193663878|gb|FK614200.1|FK614200
genomic: CCC-AAGT-GAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: TTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG ACCGGTTATAGACCCTATCGCATCAATATTTCATCGAATGCTCTGTGGAAG
genomic: TTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTTACCTCAGATACTGGCAGAGGAAACCAGAAACAAAACTCAAGGGTGACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtggttttagtttgcctgtaatatattatgaagaattactatctcttgtaatctttttaaataattttcatattttttattattttttttgcttccttgtag
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