Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGACTTTTCTGGAACTGAGgtgtgttacttgtctcatgagtttaggttattattcttttttgtagtattttctttgtgtttttttattgttgttataactggccaagaaggatgtatta...
Basic information
species | Glycine max |
transcript | GLYMA10G35560.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g02960.t01 (Vitis vinifera), 5'ss of exon 6
GGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGACTTTTCTGGAACTGAGgtgtgttacttgtctcatgagtttaggttattattcttttttgtagtattttctttgtgtttttttattg-ttgttataactggccaagaaggatgtatta-
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GGCGGTGGAAGGTCTTCAGCGAGAGAAACCATTGCAAGAGTTGCTGCTGGAGCTGTAGCAAAGAAAATCCTCAAGAAATTTTCTGGGACGGAGgtgtgtttatgatctttgtcactgaaatcatt-ctttttaacgttatcatgaagttgtatttttacacaaactataatttctgagttctacaaaatgatcag
upper sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 6
GGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGACTTTTCTGGAACTGAGgtgtgttacttgtctcatgagtttaggttattattcttttttgtagtattttctttgtgtttttttattgttgttataactggccaagaaggatgtatta----
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GGTGGTGGTAGATCTTCAGCGAGAGAAACCATTGGGAGAGTTGCAGCTGGAGCTGTTGCTAAAAAAATACTCAAAAATTTTTCTGGAACTGAGgtatgtc-catgactgactggggt-gtttatt-ttctttattcttctagttgttttaaactcttatatgggtat-agagttcttatgttttgatgcatctagttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37996069|gb|CF807658.1|CF807658EST: CTTCTGGTGCTGTTGCTNNNNNNNTCCTTAAAGACTTTTCTGGAACTGAG ATTCTTGCCTATGTCTCTCAGGTTTATAATATTGTTCTTCCAGAGGACCTT
genomic: CTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGACTTTTCTGGAACTGAGgtgtgttact ... tatttttcagATTCTTGCCTATGTCTCTCAAGTTTATAATATTGTTCTTCCAGAGGACCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGACTTTTCTGGAACTGAGgtgtgttacttgtctcatgagtttaggttattattcttttttgtagtattttctttgtgtttttttattgttgttataactggccaagaaggatgtatta
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA