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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaaagatgatagttatatatttcagatcacctttgttttttagcatttcataggatttatgcatgttacttaacag

Basic information

species Glycine max
transcript GLYMA10G35320.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35320.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 6
GTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaaagatgatagttatatatttcagatcacctttgttttttagcatttcataggatttatgcatgttacttaacag
||||| |||||||| || ||||| |||||||| || ||||||||||| || |||||||| ||||| ||||| || |||||          | ||||||||   || || | | |  || |||    | |  || |   ||  |  |||||||
GTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaaac-------caacatatttca---catctctttctcatatcatccactggacttgacaaattgtcattaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258515|gb|BE346662.1|BE346662
EST:     CACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG                         GGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCATT
genomic: CACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaa ... tacttaacagGGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCATT
EST: gi|7796764|gb|AW782158.1|AW782158
EST:     CACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG                         GGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCATT
genomic: CACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaa ... tacttaacagGGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCATT
EST: gi|9564725|gb|BE474234.1|BE474234
EST:     CACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG                         GGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCAT
genomic: CACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaa ... tacttaacagGGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCAT