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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCTTTATGGTTACTGCTACTCTGGACATGCAGTGTTCCCGAACATTTATACATCCATGGCAAATCCAAACCAATTTCCTGGAGTGCTCTTAGCATGgtaaataacttttggccataatctatagctcagctgccactagtccttccactaaatattgaatctcctcaagtcctgtacaaattgtaatttacaagta...

Basic information

species Glycine max
transcript GLYMA10G35280.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35280.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g01100.2 (Oryza sativa), 5'ss of exon 7
TTGGTCTTTATGGTTACTGCTACTCTGGACATGCAGTGTTCCCGAACATTTATACATCCATGGCAAATCCAAACCAATTTCCTGGAGTGCTCTTAGCATGgtaaataactt-ttggccataatc--tatagctcagctgccactagtccttccactaaatattgaatctcctcaagtcctgtacaaattgtaatttacaagta
|||| || |||||||| |||||||| |||||||  |||||||||||||| ||| | ||  ||   ||||  ||||| ||||||    | || ||  | |||||| |||||   | |  | ||||  || ||  ||  | |||  | | |    || ||||   | |    ||||||   ||       |||   |||  ||  
TTGGACTGTATGGTTATTGCTACTCAGGACATGGTGTGTTCCCGAACATCTATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGgtaattaactaacttggaacaatcgatacagtccatattccataatttcgattac-aaatgcagta----ctcaagatttggctt--ctgtttcttatcag--

upper sequence: GLYMA10G35280.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G39130.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGGTCTTTATGGTTACTGCTACTCTGGACATGCAGTGTTCCCGAACATTTATACATCCATGGCAAATCCAAACCAATTTCCTGGAGTGCTCTTAGCATGgtaaa------taacttttggc-------cataatctatagc---tcagctgccactagtcc----ttccactaaatattgaatctcctcaagtcctgtacaaattgtaatttacaagta-
| || || ||||||||||||||||| |||||||| || ||||| || |||||||| || ||||| || |||   ||||  ||||  || |||||  ||||||||       |  ||||   |        ||  |||| | |   ||  ||  | ||  | |    ||| |  ||||||| || |   |  |   | | |  | |  ||||||    | | 
TAGGACTCTATGGTTACTGCTACTCAGGACATGCTGTTTTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGgtaagcttatgtcgctttaaacaagttcttatcttctacaacgcttcgactttcgcttatgcaaacttcaagaaaatattcaaccattttgatagcagaaagattgataattt-tgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193685373|gb|FK626589.1|FK626589
EST:     TATACATCCATGGCAAATCCAAACCAATTTCCTGGAGTGCTCTTAGCATG                         TTTTGGTATTTGTACCTTATTGTATGCTGGGGCTGCNGTAATGGGATACAC
genomic: TATACATCCATGGCAAATCCAAACCAATTTCCTGGAGTGCTCTTAGCATGgtaaataact ... tttctcacagTTTTGGTATTTGTACCTTATTGTATGCTGGGGCTGCTGTAATGGGATACAC