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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccctattttgtggtctttgctggcactaatttgcagatatgtactgatagtgtttcttacctaaggatatgttcgtctgtctcttgaccag

Basic information

species Glycine max
transcript GLYMA10G35270.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 5'ss of exon 6
TATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccctattttgt---ggtctttgctggcactaatttgcagatatgtactgatagtgtttcttacctaaggatatgttcgtctgtctcttgaccag
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TATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTGgtatccctctctctcagttggatcattaagtcaattttcatgtctttaaatattgatctagttatgtgtcagtgttctaattcttcttccttctgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930152|gb|BU547291.1|BU547291
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG                         GTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
EST: gi|193649644|gb|FK596781.1|FK596781
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG                         GTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
EST: gi|31460788|gb|CD402816.1|CD402816
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACTAAAATATTACTTTG                         GTTTTAGGTCCCAACATGCTGAAATGGTTATGTTCCACGGCAGTAAGCCAT
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
EST: gi|193643011|gb|FK588165.1|FK588165
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG                         GTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAG
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAG