Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGgtagtgcaacactatgtaatatagttgtcatataaacaaaataatcatttttttctcatatagtatgctttactgtttccatgaaggatggcactgactatgcag
Basic information
species | Glycine max |
transcript | GLYMA10G35230.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 6
lower sequence: AT3G54840.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGgtagtgcaacactatgtaatatagttgtcatataaacaaaataat-catttttttctcatatagtatg-ctttactgtttccatga-aggatggcactgactatgcag---
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GAACTGCAAAAGCATGGAAGCCCAGATATTGTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGgtg-------agtttgcgtaaacgtcttcatctagattccgtagcgcattttgttgtcactttcattgtccttgcttcttcagtggtatcacattttcaatttcttaacag
upper sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 6
GAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGgt-agtgcaacactatgtaatatagttgtc--atataaacaaaataatcatttttttctcatatagtatgc-tttactgtttccatgaaggatggcactgactatgcag
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GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAACAAAGCTGATCTTCATGAGAATCGAGAAGTACCAGTTCAAgtgagtgtcatactatttgtctgaatgcttcagcttttcctatgtattcacaaaatgtgctt-taacacgtgtttattttattcttgaag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7587998|gb|AW703803.1|AW703803EST: GCGGGAAGTTGCTGTCCAG AGAAGAATGGTATGTTTTTCATAGAGACATCTGCAAAGACAGCAGATAATA
genomic: GCGGGAAGTTGCTGTCCAGgtagtgcaac ... gactatgcagAGAAGAATGGTATGTTTTTCATAGAGACATCTGCAAAGACAGCAGATAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGgtagtgcaacactatgtaatatagttgtcatataaacaaaataatcatttttttctcatatagtatgctttactgtttccatgaaggatggcactgactatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC