Sequence
atgc intronic sequence ATGC exonic sequenceGTAAGGGAAACAGTGCGTGATGTCGCATTTTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAgtaatttctcttccagtctttatttggtatttaactgtttactctaagcttttgttccttgctgttccaatgaaagcacctctaaaatttgaatagtttt...
Basic information
species | Glycine max |
transcript | GLYMA10G34390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34390.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g08770.1 (Oryza sativa), 5'ss of exon 6
GTAAGGGAAACAGTGCGTGATGTCGCATTTTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAgtaatttctcttccagtctttatttggtatttaactgtttactctaagcttttgttccttgctgttccaatgaaagcacc--tctaaaatttgaatagtttt--
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GTGAGGGAAACTGTGCGCGATGTGGCATTCTTACATAATGAGCAACTCTATGCTGTCGCCCAGAAAAAgtaatttccttaatatactcaatct----ttgcaatatttttccaatgctcataacataggtcaacatgttccatattctggtcttgagtcttgacaaagatgt
upper sequence: GLYMA10G34390.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0074g00030.t01 (Vitis vinifera), 5'ss of exon 6
GTAAGGGAAACAGTGCGTGATGTCGCATTTTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAgtaatttctcttccagtctttatttggtatttaactgtttactctaagcttttgttccttgctgttccaatgaaagcacctctaaaatttgaatagtttt---
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GTTAGGGAAACAGTCCGTGATGTGGTGTTCTTGCACAATGAGCTGTTTTTTGCTGCTGCCCAAAAGAAgtatgcccttttcta---taaatagaatattcttcactatatgaatgcatgttatttcttatgagaacatttctgttaagattcaaagctgtatgataagagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19269447|gb|BM885703.1|BM885703EST: GATGTCGCATTTTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAA GTACCCATACATCTATAATCGAGAAGGCACAGAACTTCACTGCCTCAAG
genomic: GATGTCGCATTTTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAgtaatttctc ... aatttgacagGTACCCATACATCTATAATCGAGAAGGCACAGAACTTCACTGCCTCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTAAGGGAAACAGTGCGTGATGTCGCATTTTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAgtaatttctcttccagtctttatttggtatttaactgtttactctaagcttttgttccttgctgttccaatgaaagcacctctaaaatttgaatagtttt
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc