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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttggctttttatgggtaaacttgaaattgcacgttgtgcctgtttatgctaatgttcatgtgtatttaaatgcag

Basic information

species Glycine max
transcript GLYMA10G34150.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34150.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 4
-----------------------------GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttggcttttta--tgggtaaacttgaaattgcacgttgtgcctgtttatgctaatgt---tcatgtgtatttaaatgcag----
                             || | |||  | ||    | ||| || |  || ||||| ||| | |||||||||||||||||||| || |||||||||    |  |||  |       ||| | || | |    ||| |      ||  | | |   | |  |   |||   | |      
ACATCAATGGCCAAATCTTTGCTGAGCAGGGCAAAGCTCTGAACAAAGCTGCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAAgtaagctacattccttaattcaaccctcttcatatcgtaatcagtgacaaacattggaagtatactttacctcattttgtgttctttcag

upper sequence: GLYMA10G34150.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 6
GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagc----ttggctttttatgggtaaa-----cttgaaattgcacgt-tgtgcctgtttatgctaatgttcatg-tgtatttaa-atgcag------------------------------------------------
|||| |||  | ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || |||||||     |||  ||||  |  ||  |     |||     ||  | | ||||  ||| | || |  | ||  || |||  ||    |||||                                                
GGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagcattgatttttctttcgttcattcttcttttgtgtgagcatgtgtgtgtgtgtgtgttttttttattgatgttcttggtgtgcagtcctttgtcctccctgtcatttatgattgtgtttcctttcctatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338126|gb|BI498782.1|BI498782
EST:     GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA                         TGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
genomic: GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttgg ... ttaaatgcagTGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
EST: gi|10236029|gb|BE804977.1|BE804977
EST:     GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA                         TGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
genomic: GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttgg ... ttaaatgcagTGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
EST: gi|151394825|gb|EV264696.1|EV264696
EST:     GCATCCCGCAATGTCAAAGTTATAGTAGTGTGAAACCCTTGCAATACAAA                         TGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAA-TTTTCA
genomic: GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttgg ... ttaaatgcagTGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
EST: gi|254344943|gb|GR851426.1|GR851426
EST:     GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA                         TGCATTAATATGCTTGAAGAATGCTCCTAACATTCCTGCAAAAAATTTTCA
genomic: GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttgg ... ttaaatgcagTGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
EST: gi|151403877|gb|EV273687.1|EV273687
EST:     GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA                         TGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
genomic: GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttgg ... ttaaatgcagTGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
EST: gi|27426251|gb|CA937771.1|CA937771
EST:     GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA                         TGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA
genomic: GCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttgg ... ttaaatgcagTGCATTAATTTGCTTGAAGAATGCTCCTAACATTCCTGCCAAAAATTTTCA