1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAAGCAAGCCCTATGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAGgtttgtagtgttcttgtacttttaatagtatcatgtatagggttcagtttaatcattaaaaacaatgttgagtttatgttaagctctcaaaccaaatttc...
species | Glycine max |
transcript | GLYMA10G32860.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAG CTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAACEST: gi|9985036|gb|BE659144.1|BE659144
genomic: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAGgtttgtagtg ... tatgggtcagCTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAAC
EST: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAG CTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAACEST: gi|26268778|gb|CA819841.1|CA819841
genomic: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAGgtttgtagtg ... tatgggtcagCTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAAC
EST: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAG CTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAACEST: gi|31471574|gb|CD413602.1|CD413602
genomic: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAGgtttgtagtg ... tatgggtcagCTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAAC
EST: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAG CTACTAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAACEST: gi|193427688|gb|FK394372.1|FK394372
genomic: TGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAGgtttgtagtg ... tatgggtcagCTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAAC
EST: CCAAGCTTTTACCATGAAGGG-CCCCTCCTAAGGTTGAATTGAAGAAG CTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAAC
genomic: CCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAGgtttgtagtg ... tatgggtcagCTACCAGCAACGCGAGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGCTATCAAGCAGCTAAGGAAGAGTCTAACTTTTAAAGCAAGCCCTATGCCAAGCTTTTACCATGAAGGGCCCCCTCCTAAGGTTGAATTGAAGAAGgtttgtagtgttcttgtacttttaatagtatcatgtatagggttcagtttaatcattaaaaacaatgttgagtttatgttaagctctcaaaccaaatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaacaa