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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaatttcaatttgttaatcaagatgcaacaattgggatgtttttttggttgggggattgcttgtcattgaatcagaatcacttgttgatgttt...

Basic information

species Glycine max
transcript GLYMA10G32660.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g55360.4 (Oryza sativa), 5'ss of exon 6
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagc--agaatttcaatttgttaatcaag--atgcaacaattgggatgtttttttggttgggggattgcttgtcattgaatcagaatcacttgttgatgttt
 |||||  |||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||||||| || || ||||| ||||| ||| |||||||   | |  |||  ||  ||  |   |   | |   || |  | |  | | |        | || | || |  |      ||| |    ||    |    
GTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGgtgagatgaaagcttctgttaattgtttttgtagttctctaactatgctagtctatgtcagttagcatggtttattttcacgcaagactactatgccact----

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g17990.1 (Oryza sativa), 5'ss of exon 6
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaatttcaatttgttaat-caagatgcaacaattgggat----gtttttt-tggttgggggattgcttgtcat-tgaatcagaatcacttgttgatgttt
 ||||||||||| | ||| || || || ||| | |||||||| |||||||||||||| ||| |||| ||||| || || |||||  | ||||||||| |||| || || | ||   | |    ||  |   | |||   | | | |    |||| |  | |||||    |   |    || |   |||||||    |  |||     
CTTCTTCTTTGGGAAAACACCCTTAATTAAGCTCTCTCCAAAAAAAACTTGGGAGGGCTTTCTAGGTGCATCAGTGACTACCATGCTTTCTGCATTTGTGgttagtagcactt--gtctacccatatatccttcaatcgtagaggtctcagtttctcattgttggtaactaattcagtatctcgttcagaatagaattctga-----

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 6
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgag------cagaatttcaatttgttaatcaagatgcaacaattgggatgtttttttggttgggggattgcttgtcattgaatcagaatcacttgttgatgttt
 |||||  |||| ||||| || || |||||||| |||||||||||||||||||| |||||||| || ||||| || || || ||||||||||| ||| |||||||         |||| |   ||  | |||| |||      || | ||  |||||||||    |       |||||  |     ||  | ||   ||  | |||
GTTCTTTCTTGGGAGAACACCATTAATCAAGTTGTCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCAGTGACAACTATCATCTCTGCGTTTCTGgtgagactttgttaaattcctgattcctcatcaggata-gtttatagcgacttttttttggaaatgacgacatttgtctat-----agtgttacccctttgttttt

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G825110_T01 (Zea mays), 5'ss of exon 6
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgag------cagaatttcaatttgttaatcaagatgcaacaattgggatgttttttt---ggttgggggat-tgcttgtcattgaatcagaatcacttgttgatgttt
 |||||  |||| ||||| || || |||||||| || ||||||||||| ||||| |||||||| || ||||| || || || ||||||||||||||| |||||||         ||||     ||  | || | |||      || |  ||||||||||     ||  | ||| || || |      |||    |  ||           
GTTCTTTCTTGGGAGAACACCATTAATCAAGTTGTCCCCAAAGAAAACATGGGAAGGTTTTATTGGTGCATCCGTGACAACTATCATCTCTGCATTTCTGgtgagactttgttaaattctcggtttctcattaggataattttatagcaatgttttttttgaaattatgagatctgtttatagccttatctctttggctc----------

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G062416_T02 (Zea mays), 5'ss of exon 1
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaatttcaatttgttaatcaagatg-caacaattgggatgtttttttggttgggggattgcttgtcattgaatcagaat-cacttgtt-gatgttt
 ||||||||||| | ||| ||  |||||||| | |||||||||||||| ||||| || |||||||| ||||| || || ||  |  | ||||||||| |||| || | |     | | |  |  | ||  |  |     ||   ||   |      |      ||  |   |   ||   || |||    ||||| ||||   
GTTCTTCTTTGGGAAAACACCACTGATCAAGCTCTCTCCAAAGAAAACATGGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaatacgtactattcttctaaaattatctctgtttactattgctaaccaatgaccatataaccaatatgtggtgcataatatttttgttcgatg---

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G62430.1 (Arabidopsis thaliana), 5'ss of exon 6
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaatttcaatttgttaat-caagatgcaacaattgggatgtttt-tttggttgggggattgcttgtcattgaatcagaatcacttgt-----tgatgttt---
|||||||||||||||||| ||||| || ||| | |||||||||||||| |||||||| || || || || ||||| || || ||||||||||||||| | ||||| | |  ||   ||||  |   || |   || |||   |  |   |  |||  |       ||  |   |||        |||   ||||     | ||||||   
TTTCTTCTTTGGAAGAACGCCTTTAATAAAGCTGTCTCCAAAGAAAACATGGGAGGGATTCATCGGAGCCTCTGTGACAACTATCATCTCTGCATTTGTTgtgagtatatgttacttttgccaccacatggcacatcaaaatgcttacatcatttcatcatctttttcttcaccatgcttctgaaatgttttgtatgcgtaatgtttcag

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G22340.3 (Arabidopsis thaliana), 5'ss of exon 5
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaatttcaatttgttaatcaagatgcaacaattgggatgttttt-ttggttggggga-ttgcttgtcattgaatcagaatcacttgttgatgttt
|||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| || || || ||| |||||||  | || ||||||||  |||| |||    |||  ||  | |||| |  ||       |||    ||  |  ||| ||       ||||||||  ||| |                      
TTTCTTCTTTGGAAGAACACCGTTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGGAGCTTCTATTACCACAGTGATTTCTGCATTCCTGgtaagcttgtttt--atgggctaataagtatatgttttttgacgagtagtaattgattaataatcttgcttgtttttgtag---------------------

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0598g00010.t01 (Vitis vinifera), 5'ss of exon 6
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaatttcaatttgttaatcaagatgcaacaattgggatgtttttttggttgggggattgcttgtcattgaatcagaatcacttgttgatgttt
                               |  ||| | |  |  ||||       | ||||    |    | || |  |    |||| ||  ||  |  |  | ||||   |      || || ||| |                       ||      | || || |||||  |  ||                  
----------------------------GTTTCTTCTTCCAGCATCACTTA-----TTGTTATCAATG---ATATTGCTGCTTATATCTTTGgtttcttctttggaagaacacct-----ttgattaagttnnnnnnnnnnnnnnnnnncccaagt--aaaaactgttt-tcattagactag------------------

upper sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 5'ss of exon 6
TTTCTTCTTTGGAAGAACCCCTTTGATCAAGTTATCTCCAAAGAAAACTTGGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaatttcaatttgttaatcaaga-tgcaacaattgggatgttt-ttttggttgggggattgcttgtcattgaatcagaatcacttgttgatgttt
|||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || ||||||||| || | || || |||||||||||| ||||   |     ||   |||| | |  | ||   ||   ||||   ||    ||||   |   | ||    ||     | ||     |    ||  |     |
TTTCTTCTTTGGAAGAACACCTTTGATTAAGTTATCTCCAAAAAAAACTTGGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctccttttctttggtgacaatgaacacatatattgtcttgcacatttttacttctgaataatgtggggaagcatttt--ttggctggaggaacgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047133|gb|CA784017.1|CA784017
EST:     GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG                         CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: gi|58016663|gb|CX703405.1|CX703405
EST:     CCACCATCATCTCTGCATTTATG                         C-TGCTANNCATCATGGGTCGCTCTCAGTGGCTANCGTGTCCAAGGAAG
genomic: CCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTA-ACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: gi|13480063|gb|BG509406.1|BG509406
EST:     GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG                         CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGA--
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: gi|22524723|gb|BU083534.1|BU083534
EST:     GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG                         CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: gi|31561270|gb|CD487108.1|CD487108
EST:     GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG                         CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: gi|10709049|gb|BF008710.1|BF008710
EST:     TACCACCATCATCTCTGCATTTATG                         CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
genomic: TACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: gi|17153399|gb|BM143332.1|BM143332
EST:     GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG                         CTTGCTAACATCATGGGTCGCTCTCAGTGGCTA
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTA