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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATGGAGGTGATACAAGGCACTGGTGATATCAGTGCTGATATACAGAAATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatcttagattttgtttagcttatcggtgatcattactagcagtgtctaaatggcctggaataggacattgaactgcaagccttatgttctgga...

Basic information

species Glycine max
transcript GLYMA10G32590.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193323051|gb|FK292073.1|FK292073
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGCTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|151409417|gb|EV279225.1|EV279225
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAAGGCGTCATGAAGTCACGGATTCAT
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAA-GGCGTCATGAAGTCACGGATTCAT
EST: gi|151412396|gb|EV282208.1|EV282208
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAAGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|254340633|gb|GR854361.1|GR854361
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAAGGCGTCATGAAGTCACGGATTCAT
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAA-GGCGTCATGAAGTCACGGATTCAT
EST: gi|208110334|gb|GD911790.1|GD911790
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|151411234|gb|EV281045.1|EV281045
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|208204189|gb|GE006994.1|GE006994
EST:     TTCTCCTATCTTTGTAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: TTCTCCTATCTTTG-AAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|192326692|gb|FK018879.1|FK018879
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAAGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|10231207|gb|BE800023.1|BE800023
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|254340634|gb|GR854362.1|GR854362
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|209707562|gb|BW680932.1|BW680932
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|151408958|gb|EV278766.1|EV278766
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|58025262|gb|CX712003.1|CX712003
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|192324104|gb|FK019395.1|FK019395
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATAT
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATAT
EST: gi|192295514|gb|FG988088.1|FG988088
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAAGCGCCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|20813924|gb|BQ298402.1|BQ298402
EST:     AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: gi|12773166|gb|BG238093.1|BG238093
EST:     AATTTTGTACTGACTNTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG                         GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCATGGAGGTGATACAAGGCACTGGTGATATCAGTGCTGATATACAGAAATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatcttagattttgtttagcttatcggtgatcattactagcagtgtctaaatggcctggaataggacattgaactgcaagccttatgttctgga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA