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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTTGGATACTGTCCGGAGCCTATTTTTGGGTGCAGGCTTCACCGAGgtacttttcttttttaattggaagacgagcttttgggattggtacaagttgacttgtgctcctacatgaagtttaatacttgtttgctggttctcatgta...

Basic information

species Glycine max
transcript GLYMA10G31030.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31030.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g23169.1 (Oryza sativa), 5'ss of exon 6
AGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTTGGATACTGTCCGGAGCCTATTTTTGGGTGCAGGCTTCACCGAGgta-cttttcttttttaattggaagacgagcttttgggattggtacaagttgacttgtgctcctacatgaagtt-taatacttgtttgctggttctcatgta
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AGTGGGATTCCGGGAATACATGCGCTCAGATGGCACCCTTTCATACTTCTTCACATTAGATACAGTGAGAGAACTCTTTCATGCCTCTGGACTACTAGAGgtaactcggattgttttgacatgttctcagttttctagttactttccacctttctt-tgcccctgcatgtgcccctcatggtagcattcaatattttatga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335064|gb|CO978930.1|CO978930
EST:     TTTGTTTGGATACTGTCCGGAGCCTATTTTTGGGTGCAGGCTTCACCGAG                         CTCGAGCTTGATTATTGTTGTGTTAAGTCTGTAAATCGCCAGAAAGGAAAG
genomic: TTTGTTTGGATACTGTCCGGAGCCTATTTTTGGGTGCAGGCTTCACCGAGgtacttttct ... aactgtgcagCTCGAGCTTGATTATTGTTGTGTTAAGTCTGTAAATCGCCAGAAAGGAAAG