1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGAGACAGATTGGCCTCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtcacacagttttagatgattccataaggagtcctagtctgtttgaggaattataattttttaaaactcacaaacctttttcttttaaacttgcttttctactataacttttgccttcatttcag
species | Glycine max |
transcript | GLYMA10G30880.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|14258404|gb|BG881312.1|BG881312
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|21993634|gb|BQ785162.1|BQ785162
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAGACAGATTGGCCTCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtcacacagttttagatgattccataaggagtcctagtctgtttgaggaattataattttttaaaactcacaaacctttttcttttaaacttgcttttctactataacttttgccttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA