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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCAGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAGgtaatataatttttttttgtcacttgttaacaatggagcttggaagactatgttgcctttaactttggaaatatgctttctgcag

Basic information

species Glycine max
transcript GLYMA10G29600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G27470.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCAGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAGgta---------ata-taatttttttttgtcacttgttaacaatggagcttggaagactatgttg----cctttaactttggaaatatgctttctgcag
|||||||||||||||||||||| || |||||||| || |||||||| || ||||| || ||| | ||||| ||||| || || ||  |||| ||  |||||||         ||| |||    |  | |   |||    ||||| |    |  ||     ||       ||   ||| ||    || |  ||  | |||
CTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGgtataaacaaacatagtaacacctactcgcagctttaagacaattgtttctttaatgtattgggaaaatccgccaacattatgtatttttttggtccag

upper sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 6
CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCAGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAGgtaa-tataatttttttttgtcacttgttaacaatggagcttggaagactatgttgcctttaactttggaaatatgctttctgcag
||||||| ||||||||||||||| ||||||||||||| || || || |||||||| |||||||| ||||||||||| || ||| ||||| ||||  ||||||||    || || |       | ||||     | ||    |  || |  ||| ||   ||||  ||    | ||| ||||  |||
CTGGTGAGGGAGATGACAAATATTTGATTGCAACAGCCGAACAACCCCTCTGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaacttgtgaaccctatttgtc--tcacggtatctacaaaagaatggtgg--ttaatatt----acatgttttcc-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426738|gb|CA938258.1|CA938258
EST:     TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAG                         ATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
genomic: TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAGgtaatataat ... ctttctgcagATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
EST: gi|151397414|gb|EV267287.1|EV267287
EST:     TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAGTAAG                         ATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
genomic: TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAGgtaatataat ... ctttctgcagATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG