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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttttttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag

Basic information

species Glycine max
transcript GLYMA10G29250.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttttttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
|||| ||||| |||||||||||||| || ||||| ||||| || || ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||  |  | ||| |   ||    | |    ||||| |     | || ||  |      ||    | | |    | | ||     | || |                                           
CAAAGCTTGTCCGTGATGCCTTTCAGCTTGCAAAGGAGAAATCCCCCTGCATCATTTTTATTGATGAAATTGACGCAATTGGAACAAAGCGTTTTGATAGgtac-atttagcattgtctttatca-atgcatgcaactagacatattattgttcac---agtataataaactgtaattttttcctgctacag------------------------------------------

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g21660.1 (Oryza sativa), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttttttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
||| ||||||||||||||||||||| || || ||||||||  | |||||||||||||| || |||||||||||||||||||| |  ||||  ||||||||||||     | ||  ||  | |   | | ||    |||   |      |||   | |      | | | |  ||    || ||  ||||| || |     ||| | |  |  | | |                 
CAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGATAGgtat-----gaca--aacatggtcgttccttcatcatt---tcccacttttgaatatgtgaacaaatacactaggtcttttct--gttaatttct-----ttccagcaattgtttgt-----------------

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttttttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
| || |||||| | ||||| ||||| || || || |||||  | || ||||| || ||||| |||||||||||||| ||||| |||||||||||||| |||||  |  |   | | | || |  || || |  | | || ||||  |    | ||||      |   | |||||  ||| ||  ||||  || | |    |   ||                            
CTAAGCTTGTTAGAGATGCTTTTCAGCTTGCTAAGGAGAAAGCCCCGTGCATCATCTTTATTGATGAAATTGATGCCATTGGAACAAAGCGTTTTGACAGgtac-attttttatttagtttgtcatccagt--ctaatgtctttcctaacacctttta-----acctacatcagtttgtgaccaagtttgatagacattttaacaagc--------------------------

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttttttgaggtagagagatcaga--gtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
|||| ||||| ||||||||||||||||| || ||||||||  | || |||||||| || ||||||||||| ||||| ||||||||||||||||| || |||||  |        |  ||  |||       | ||||| |  | |||||    ||| | || ||    | ||| |     ||  || ||| |   ||   |                                   
CAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGgtacaaatc-----tttttctgat-------tccaattcatgtatttctgcactttctcagctattt-gctcaaatcacattctttggttgaga-gtacag-----------------------------------

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttttttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
|||||||||| |||||||| || |  || ||||||||||| || || || ||||| || |||||||| ||||| ||||| || |||||||||||||||||||| |           || ||||   |  |       | ||| |||| |||  ||| |||  |    |   | || | ||| || | | |                                            
CAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAGAAATCCCCTTGTATTATATTCATAGATGAGATTGACGCAATAGGGACAAAGCGTTTTGATAGgtact---------ctatctagagtcatgtca-----taactattttattttctttctga--tgactaatgctgacttttaattggcttacag-----------------------------------------

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttt---tttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
| |||||||| |||||||||||||| || || |||||||| || || ||||| ||||||||||||||||||||||| || || |||||||| |||||||||||  | |    | |  |||||   ||||| |   || ||  ||||| |     |   ||||   |  |   ||||  |||  ||| |  | |   | |||     | ||| |    | |  ||    | |||||||
CGAAACTTGTCCGTGATGCCTTTCAGCTTGCTAAAGAGAAATCTCCTTGCATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgta--aaccattattggtttagcactacatctttcat-gatatttttatcaaaatggatttggattgaaattatcaaggtga-actca--tgagcagcctc---cttgactatagacttttctgccttttattgcag

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ37626 (Selaginella moellendorffii), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagat--atacatttgcaattgacttttttctttcttttttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
|||| || ||  | ||||||||||| || |||||||||||| | || ||||| ||||| || |||||| | || || ||||| || || ||||||||||||| |   ||   |        |     |  | |  || | |||||   |                                                                                       
CAAAGCTCGTAAGAGATGCCTTTCAGCTGGCAAAAGAGAAGGCGCCCTGCATCATTTTCATCGATGAAGTCGACGCTATTGGGACCAAACGTTTTGATAGgtttggtctcaaaacggacacggccggtttactaacagt-gacttacatacag-----------------------------------------------------------------------------------

upper sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ15061 (Selaginella moellendorffii), 5'ss of exon 6
CAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttttttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcag
|||| || ||  | ||||||||||| || |||||||||||| | || ||||| ||||| || |||||| | || || ||||| || || ||||||||||||| |   ||   |       |        ||| | |        || | | |                                                                                  
CAAAGCTCGTAAGAGATGCCTTTCAGCTGGCAAAAGAGAAGGCGCCCTGCATCATTTTCATCGATGAAGTCGACGCTATTGGGACCAAACGTTTTGATAGgtttggtctcaaaacggac-accggccggtttactaacagtgacttacatacag--------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6847857|gb|AW350147.1|AW350147
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGNNTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|58017156|gb|CX703898.1|CX703898
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|193451342|gb|FK420562.1|FK420562
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|254342561|gb|GR858723.1|GR858723
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|4290740|gb|AI437520.1|AI437520
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|6482334|gb|AW201601.1|AW201601
EST:     GCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: GCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|4307528|gb|AI444060.1|AI444060
EST:     TAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: TAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|22525777|gb|BU084588.1|BU084588
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|9901285|gb|BE610253.1|BE610253
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
EST: gi|298195294|gb|HO043822.1|HO043822
EST:     ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAG                         TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA
genomic: ATTATTTTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGgtattagctg ... ctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAA