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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACTTTTCAACTGTACCGCTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcaccttctaatataaaatgttgtagctaagctctctttgcctatagtttttctgatatgctacaattttgcacctgtggaaaatgcaatgtagcc...

Basic information

species Glycine max
transcript GLYMA10G16090.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G16090.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G151549_T01 (Zea mays), 5'ss of exon 5
GCAACTTTTCAACTGTACCGCTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgc---accttctaatataa-aatgttgtagctaagctctctttgcctatagtttttctgatatgctacaattttgcacctgtggaaaatgcaatgtagcc
| || |||   | ||| ||  | || |||||||||||||||||||||||||| ||||| ||||||||||||||  | || || |   |||| || ||  ||| ||    |  ||||  |  |  |||| | ||||       |  |      ||  | |    || ||  ||| |||   | || |  ||  ||   | |||  
GAAATTTTGTCAGTGTTCCTTTGAGAGATGAGTTCCTTGAAAATGCTAGGCTTTTTATTTTCGAGACATACTGCCGTATCCATCGGTGCATCGATATCAGgtgtggcaaaatttctctttcagcaatgctttagcaggaggatgatgattgttaagtataagtat-tgacacattttcagatctct--aatttgttttctagt-

upper sequence: GLYMA10G16090.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G038313_T01 (Zea mays), 5'ss of exon 5
GCAACTTTTCAACTGTACCGCTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcaccttctaat--ataaaatgttgtagct---aagctctctttgcctatagtttttctgatatgctacaattttgcacctgtggaaaatgcaatgtagcc
| || |||   ||||| ||  | || | ||||||||||||||||||  | || ||||| ||||||||||||||  | || || |   ||||||| ||  |||  |    |   | |  |   | ||   | | |   ||  | ||| |  ||  |    || |  |     |||  |||                | | ||    
GAAATTTTGTCACTGTTCCTTTGAGAGCTGAGTTCCTTGAAAATGCCCGACTGTTTATTTTCGAGACATACTGCCGTATCCATCGGTGCATTGATATCAGgtgggtgtttatgactctacgcactgcaatgggtggaaatttttctctttctgcaacaatt-tagtggatgacatgttttttgtcactactccctccaggt----

upper sequence: GLYMA10G16090.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0252g00070.t01 (Vitis vinifera), 5'ss of exon 6
GCAACTTTTCAACTGTACCGCTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgc----accttctaatataaaat-gttgtagctaagctctctttgcctatagtttttctgatatgctacaat--tttgcacctgtggaaaatgcaatgtagcc
| | |||||| ||||| ||  | ||||||||||| || ||||||||  |||| ||||| || |||||||||||  ||||||| ||||| |||||||||||||||      || |||| | ||   ||   | |||||    ||| ||||   ||||      |||||  ||||| |  || |||    |  |    | | ||     
GAAGCTTTTCTACTGTGCCATTGAGGGATGAGTTTCTCGAAAATGCCCGGCTTTTTATTTTTGAGACATACTGCCGAATACATCAACGAATTGACATGGGgtatatttatactttctgaaatttgattaatatagcttcattctttttg---ataggcaaattgatagactacattgattagcatagcttcatgtgggagtgc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703908|gb|BW661598.1|BW661598
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|192314055|gb|FK008795.1|FK008795
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAAGAGGCTGAGAAATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|58015713|gb|CX702455.1|CX702455
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|209696629|gb|BW666925.1|BW666925
EST:     ATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: ATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|193403478|gb|FK366848.1|FK366848
EST:     GCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: GCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|209697045|gb|BW667035.1|BW667035
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|209707122|gb|BW661576.1|BW661576
EST:     TCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: TCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|193434366|gb|FK401092.1|FK401092
EST:     GCATTGACATTGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGA
genomic: GCATTGACA-TGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGA
EST: gi|193392690|gb|FK359185.1|FK359185
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|31308156|gb|CD393359.1|CD393359
EST:     GAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: GAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|6481581|gb|AW200852.1|AW200852
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATCTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|11274645|gb|BF324982.1|BF324982
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|10254604|gb|BE822370.1|BE822370
EST:     CTATTTATNNTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|8283830|gb|BE021389.1|BE021389
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|7692748|gb|AW760848.1|AW760848
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|21600493|gb|BQ610824.1|BQ610824
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|254348332|gb|GR852011.1|GR852011
EST:     CTA-TTATC-TCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|58015407|gb|CX702149.1|CX702149
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|21479769|gb|BQ576452.1|BQ576452
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAG
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAG
EST: gi|193405196|gb|FK372573.1|FK372573
EST:     GCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: GCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|5761286|gb|AI966649.1|AI966649
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|12773923|gb|BG238850.1|BG238850
EST:     TACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTT-CTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: TACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
EST: gi|10709957|gb|BF009681.1|BF009681
EST:     CTATCTATCTTCGAGACATACTGTAGATTACACCGACGCATTGACATGTG                         AGTGCTTGGTGAGAAG
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAG
EST: gi|21888755|gb|BQ741968.1|BQ741968
EST:     CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGG                         AGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT
genomic: CTATTTATCTTCGAGACATACTGTAGAATACACCAACGCATTGACATGGGgtatgcacct ... attttttcagAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGAT