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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGACTCTTTGTGGTGTCCTCCAAATATGAATAACTACATGGGACAAATGGTTGTGGCAATGAACAAACTCTCCACTCTTGAAAGCTTTGTGAGACAGgtacgttacatatatgctttgactatatatatatatatatagagagagagagggtgtgtttaaatttccatcgaaattacgttaaatgaagaaactgcac...

Basic information

species Glycine max
transcript GLYMA10G12000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G12000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 10
ATCGGACTCTTTGTGGTGTCCTCCAAATATGAATAACTACATGGGACAAATGGTTGTGGCAATGAACAAACTCTCCACTCTTGAAAGCTTTGTGAGACAGgtacgttacatatatgcttt------gactatatatatatata-tatagagaga-gagagggtgtgtttaaatttccatcgaaattacgttaaatgaagaaactgcac
 || |||||  || |    ||||| || |||   ||||||||||| || |||| | | || |||||||||||||| ||||||||| | ||||| ||||||||| || |  |  || || |      || |   | | | |||| ||||   ||  ||||      | ||      | |    |||  | ||| ||  |  ||      
TTCAGACTCACTGAGCGCGCCTCCTAACATGGCGAACTACATGGGTCAGATGGCTATTGCCATGAACAAACTCTCTACTCTTGAAGGATTTGTTAGACAGgtatgtaatttcaatactatttttcagagttggtgtgtgtataatatatcaaggcgagacaactggattgggaacctactccaat--ccttagattcatgaa------