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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaactgagtaatatatttcatcttccttggttattcatagatttatctgtccaatgttaattattggcttcagtttttaaacttatggttagtga...

Basic information

species Glycine max
transcript GLYMA10G10000.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196961|gb|HO041704.1|HO041704
EST:     AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|9987770|gb|BE661878.1|BE661878
EST:     AGTGGCTGAAGATGAAATGTTCAAGGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGNTACAAAAGCT-CATTTGGTGGGCCTGGGT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|15813808|gb|BI786083.1|BI786083
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|208085267|gb|GD884055.1|GD884055
EST:     AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|14205367|gb|BG839045.1|BG839045
EST:     AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAAGATGGTTACAAAAAGCTACATTTGTTTGGGGCCTG
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAA-GCTACATTTGTT-GGG-CCTG
EST: gi|151397650|gb|EV267523.1|EV267523
EST:     AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|151408011|gb|EV277826.1|EV277826
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|24205496|gb|BU964749.1|BU964749
EST:     GGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|298177257|gb|HO023504.1|HO023504
EST:     AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|14206051|gb|BG839729.1|BG839729
EST:     TGGCTGAAAGATGAAATGTTCAAAGTGGTCCGTACTGGGTAAAAGAAAGA                         CCNAGCAATGGAAGAAGATGGTTACAAAAGCTACATTTGTTGGGCCTGGGT
genomic: TGGCTGAA-GATGAAATGTTCAAAGTGGTCCGTACTGG-TAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGG-T
EST: gi|9899604|gb|BE608572.1|BE608572
EST:     AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: AGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|208284717|gb|GE084215.1|GE084215
EST:     TTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: TTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaact ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGAgtaagtaactgagtaatatatttcatcttccttggttattcatagatttatctgtccaatgttaattattggcttcagtttttaaacttatggttagtga

- - - - - -  CTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA