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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggatgtttccatttacacctcccactctcatgtgttgcccacacatttgtatttcaatttttttataaaaaagttataaaataacattgtaaactgatgttgcag

Basic information

species Glycine max
transcript GLYMA10G07820.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07820.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G52880.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat--gtttccatttacacctcccactctcatgtgttgcccacacatttgtatttcaatttttttataaaaaagttataaaataacattgtaaactgatgttgcag
||||| |||||||| ||||| ||||||||||| |||||||||||||| || |   |||||||| | ||||| || ||||| | ||| || |||||||| ||||||| ||   || ||| ||| |           ||||||  |      |||||  ||     |  |  | | || ||| |  | |   |                      
GCTGTAGTTGTTGGCGGAGGTTACATTGGTCTTGAGCTTAGTGCAGTTTTAAGGATCAACAATTTAGATGTCACTATGGTTTTCCCTGAACCTTGGTGCAgtaagttgactagtatccttttgc--------tattcatgtaatatatg-acattgttac----acgtaatgaaaacaaaatgttgacgcag---------------------

upper sequence: GLYMA10G07820.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 5'ss of exon 6
GCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggatgtttccatttacacctcccactctcatgtgttgcccacacatttgtatttcaatttttttataaaaaagttataaaataacattgtaaactgatgttgcag
|||||| ||||||| || || ||||||||||| ||||||||||||||| ||||| |||||||  | ||||||  |||||| || || || || ||||| |||||||  |   || |   |  ||    | || |  | || | |  ||    | |  | |   ||| |   |||| |  ||      |||   |   |||| |||||||  
GCTGTGATTGTTGGAGGGGGGTACATTGGTCTCGAGCTTAGTGCAGTGATGAAAATCAACAACTTAGATGTTTGCATGGTTTATCCAGAACCATGGTGCAgtaagtatagaattaccaatgaactgatc-ctgtattctggttctgac-tgctagattctttgtttgtccttaaaga--tt------taagggttccaactaatgttgct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718426|gb|BW666238.1|BW666238
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTA
EST: gi|193493627|gb|FK458809.1|FK458809
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|192330173|gb|FK019798.1|FK019798
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|193551352|gb|FK507591.1|FK507591
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|151411030|gb|EV280841.1|EV280841
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|21255678|gb|BQ452566.1|BQ452566
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|254344724|gb|GR851314.1|GR851314
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACG
EST: gi|192327629|gb|FK021306.1|FK021306
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCATGACTTTTT
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTT
EST: gi|192328367|gb|FK020078.1|FK020078
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAA
EST: gi|254340648|gb|GR854376.1|GR854376
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTTCTATGAGGGATATTAC
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtggat ... gatgttgcagTGCCACGACTTTTTACGGCTGGTATAGCTGAATT-CTATGAGGGATATTAC