1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGgtatgttcatctcttaacgcccagtattgaataagtaaatatatattccagaactaattggactttttaaaaataaatcttgatgaagaacaatccggttactgatccattcttattgaaaattgcag
species | Glycine max |
transcript | GLYMA10G05850.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTT GAAGAATACAAGAACATGGACGATGTCGGGACGCTGAAAGCTTGTGGACATEST: gi|14516440|gb|BI095112.1|BI095112
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGgtatgttcat ... aaaattgcagGAAGAATACAAGAACATGGACGATGTCGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTG GAAGAATACAAGAACATGGACGATGTCTGGACGCTGAAAGCTTGTGGTCATEST: gi|13787445|gb|BG650037.1|BG650037
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGgtatgttcat ... aaaattgcagGAAGAATACAAGAACATGGACGATGTCGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAATAAGAAGAAGCTTGTGCAATCTGCCTG GAAGAATACAAGAACATGGACGATGTCGGGACGCTGAAAGCTTGTGGACAT
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGgtatgttcat ... aaaattgcagGAAGAATACAAGAACATGGACGATGTCGGGACGCTGAAAGCTTGTGGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGgtatgttcatctcttaacgcccagtattgaataagtaaatatatattccagaactaattggactttttaaaaataaatcttgatgaagaacaatccggttactgatccattcttattgaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC