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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGgtatgttagatattccctttttccacaaagcaagagcctctctctctttttctctctagcagttcttttgattattgatcaaccattaattgtgatgaaattcag

Basic information

species Glycine max
transcript GLYMA10G05130.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05130.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGgtatgttagatattccctttttccacaaagcaagagcctctctctctttttctctctagcagttcttttgattattgatcaaccattaattgtgatgaaattcag
|| || ||  | ||||| |||||||| ||||||||||||||||| || ||||| ||||||||||||||    |||||||||           || | |     ||     | ||  |   | ||  |||      ||||    |  |     |  || || |  |||    
GAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTATTGGTCTGATGCCAATGATTGATCAGgt----tagatattc-----------aacgta-----cttgtcatattagtacttataaaagtaacagagattga-aactagaagctctttctgcttgaatag--

upper sequence: GLYMA10G05130.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 6
GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGgtatgttagatattccctttttccacaaagcaagagcctctctctctttttctctctagcagttcttttgattattgatcaaccattaattgtgatgaaattcag
|| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| |  | | ||  |           |||  | |    ||||| |  || || ||||    ||   || ||  |||| |     || |||   |          
GAACCAGTTCTTCCAGGATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgta-gaaaaagatgac-----------aagatatatttcctctcccaattact-tctaaaccttgaattaatc-ttgacc-----ttgattaacacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480494|gb|BG509837.1|BG509837
EST:     GTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGgtatgttaga ... tgaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192331411|gb|FK022716.1|FK022716
EST:     GTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGgtatgttaga ... tgaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT